calculateMaxEntScanScore {VarCon} | R Documentation

## Calculate MaxEntScan score of a splice site sequence

### Description

This function calculates the MaxEntScan score of either splice donor or acceptor sequences.

### Usage

    calculateMaxEntScanScore(seqVector, ssType)

### Arguments

`seqVector` | Character vector of nucleotide sequence of a splice site sequences. SA sequences should be 23nt long (20 intronic, 3 exonic) and splice donor sequences should be 9nt long (3 exonic, 6 intronic) only contain bases "A", "G", "C", "T".
`ssType` | Numeric indicator, if the entred sequence is a splice donor (5) or acceptor (3)

### Value

Character vector of the MaxEntScan scores generated from the entered `seqVector`.

### Examples

    calculateMaxEntScanScore("TTCCAAACGAACTTTTGTAGGGA",3)
    calculateMaxEntScanScore("GAGGTAAGT",5)

[Package VarCon version 1.2.0 Index]