generateHEXplorerPlot {VarCon} | R Documentation

## Generates plot with HZEI values and splice site strengths from a list holding information about an SNV.

### Description

This function generates a plot depicting the HZEI score changes and changes in the HBS or MaxEntScan score, from a sequence variation.

### Usage

    generateHEXplorerPlot(variationInfoList, ntWindow)

### Arguments

`variationInfoList` | Output from the `getSeqInfoFromVariation` function.
`ntWindow` | Numeric value defining the sequence surrounding of interest.

### Value

Plot stating the HZEI values per nt and splice site strength with and without the SNV.

### Examples

    #Defining exemplary input data
    transcriptTable <- transCoord    # Using pseudo transcript table
    transcriptID <- "pseudo_ENST00000650636"     # Using pseudo transcript
    variation <- "c.412C>G/p.(T89M)"
    ntWindow <- 20
    gene2transcript <- data.frame(gene_name = "Example_gene",
    gene_ID = "pseudo_ENSG00000147099", transcript_ID = "pseudo_ENST00000650636")

    results <- getSeqInfoFromVariation(referenceDnaStringSet, transcriptID, variation, ntWindow=ntWindow, transcriptTable, gene2transcript)

    generateHEXplorerPlot(results)

[Package VarCon version 1.2.0 Index]