plotProfile {VplotR} | R Documentation

## A function to generate a Vplot along chromosome coordinates

### Description

A function to generate a Vplot along chromosome coordinates

### Usage

    plotProfile(
      fragments,
      window = loc,
      loci = NULL,
      annots = NULL,
      min = 50,
      max = 200,
      alpha = 0.5,
      size = 1,
      with_densities = TRUE,
      verbose = TRUE
    )

### Arguments

`fragments` | GRanges
`window` | character, chromosome location
`loci` | GRanges, optional genomic locus. Fragments overlapping this locus will be in red.
`annots` | GRanges, optional gene annotations
`min` | integer, minimum fragment size
`max` | integer, maximum fragment size
`alpha` | float, transparency value
`size` | float, dot size
`with_densities` | Boolean, should the densities be plotted?
`verbose` | Boolean

### Value

A ggplot

### Examples

    data(bam_test)
    data(ce11_proms)
    V <- plotProfile(
        bam_test,
        'chrI:10000-12000',
        loci = ce11_proms,
        min = 80,
        max = 200
    )

[Package VplotR version 1.4.0 Index]