example_clusters {XINA} | R Documentation

## Randomly generated example datasets for XINA users. A dataset containing the XINA clustering results.

### Description

- aligned. XINA clustering results aligned by conditions

- data_column. Column names for data matrix

- out_dir. Not available in this example dataset

- nClusters. The number of user-desired clusters. It's 30 in the example.

- max_cluster. The number of clusters found in the dataset. It's 21 in the example.

- chosen_model. The chosen covariance model for the example dataset. It's VEI in the example

- optimal_BIC. BIC at the optimized clustering. It's 29473.57 in the example

- condition. The experimental conditions in the dataset.

- color_for_condition. The default color for the conditions that will be used in XINA plot drawing.

- color_for_clusters. The default color for the clusters that will be used in XINA clustering plot.

- norm_method. The used normalization method to standardize the input data. It's "sum_normalization" in the example.

### Format

A list with the example XINA clustering result

[Package XINA version 1.12.0 Index]