mutate_colors {XINA} | R Documentation

## mutate_colors

### Description

'mutate_colors' generates new color scheme for XINA clustering plot based on condition composition results (plot_condition_compositions). If any clusters have higher percentage than the 'threshold_percent', XINA will assign new colors in accordance to 'color_for_condition'. If not, XINA will give 'gray' color or user-defined color via 'null_color' parameter.

### Usage

    mutate_colors(condition_composition, color_for_condition,
      null_color = "gray", threshold_percent = 50)

### Arguments

`condition_composition` | A data frame generated by plot_condition_compositions
`color_for_condition` | A vector like 'color_for_condition' of xina_clustering
`null_color` | Default is 'gray'. This color is for clusters that are not biased to any of experimental conditions
`threshold_percent` | Default is 50. The percentage threshold for giving new colors

### Value

A data frame containing statistics of XINA network centrality scores

### Examples

    # load XINA example data
    data(xina_example)

    # Plot condition composition pie-chart with default option
    condition_composition <- plot_condition_compositions(example_clusters)
    example_clusters$color_for_clusters <- mutate_colors(condition_composition,
    example_clusters$color_for_condition)
    plot_clusters(example_clusters, xval=c(0,2,6,12,24,48,72), xylab=FALSE)

[Package XINA version 1.12.0 Index]