predictDuplexStructure {XNAString} | R Documentation

## Compute Minimum Free Energy (MFE), and a corresponding secondary structure for two dimerized RNA sequences.

### Description

This function is a wrapper for RNAcofold from ViennaRNA package.

### Usage

    predictDuplexStructureFun(obj)

    predictDuplexStructure(obj, ...)

    ## S4 method for signature 'XNAString'
    predictDuplexStructure(obj)

### Arguments

`obj` | XNAString object
`...` | optional arguments to generic function to support additional methods

### Value

list (structure and mfe)

### Examples

    obj1 <- XNAString(
      base = "ATCG",
      sugar = "FODD",
      conjugate3 = "TAG"
    )
    predictDuplexStructure(obj1)

[Package XNAString version 1.2.2 Index]