819ae3b031b34b8cac8e271abba00493 *DESCRIPTION
3d993029e5d9c2bced63b198d4d411ce *INDEX
9061328c21923f640b468c6ed98da0d7 *Meta/Rd.rds
a2fe6a2b7a9a9b5f08b8ce8f96d8b7ed *Meta/data.rds
c911db67368d56526ea12b469295ff35 *Meta/demo.rds
8503e676975364d771072956cdbca633 *Meta/features.rds
b964da8fbc8de9ba4e8108efe533ab99 *Meta/hsearch.rds
7c89dedcb075c7976d8ce63e4574a8d3 *Meta/links.rds
042321826b968e63de977d4ca9805a6c *Meta/nsInfo.rds
4ce1fb256e577b2226b0088f3387b60c *Meta/package.rds
3f0fad3e210ce565736d58ecbd18175c *Meta/vignette.rds
480dc2f5a35b92a0467c61a9755f2376 *NAMESPACE
d6c68f1fe41ced6e98a766a3757313da *R/aCGH
1fe4bfb116a0eee9b551eb735d7409eb *R/aCGH.rdb
37c08bfe91030d0a1a8611d3879c027b *R/aCGH.rdx
49377c912a6aa4c4bdd9fa156c2de6e0 *data/colorectal.rda
a93e308becd18e86d8b821778403e109 *data/datalist
7a4aa6cbc001536c1332bc840e1f720e *demo/aCGH.R
e17410217e31b05898ff9e45b36069ae *doc/aCGH.R
4d32a1bb32b73bb22dfcf705b021fd1d *doc/aCGH.Rnw
ea259cd50f78a16eaf83a178950623b7 *doc/aCGH.pdf
e8986620cbb40cc50e81e45dff5af7e1 *doc/index.html
e8764b80d6098d1767b9c3c885cc4eec *examples/clones.info.ex.txt
0da398d31f48022bc79afe13377f20c4 *examples/human.clones.info.Jul03.txt
2ff7850bacaa7670c201ec422498d39c *examples/log2.ratios.ex.txt
436d62260a25aae853cab5bcfaca0bc6 *examples/pheno.type.ex.txt
db742b85a2520c458bd3a5881b8d8338 *examples/sprocCR40.txt
a2a2ed7e08ccfcfb6adcd8ff2723ec33 *examples/sprocCR43.txt
906c8029a778215150aad4d5095c42b2 *help/+5B.aCGH.html
6070d4afc17ecac923227996d7cfd01c *help/AnIndex
906c8029a778215150aad4d5095c42b2 *help/aCGH.html
494807a272f21ad8cdb52a2b8662ca20 *help/aCGH.process.html
6901624e50d9ed4c768715d3c635dc73 *help/aCGH.rdb
4a3ec4a440ee74274133dbf9ad78de92 *help/aCGH.rdx
3cab1dac20b41e47ceb3ce632ed5a3ba *help/aCGH.read.Sprocs.html
8cc72284e55f3b378578b14e56c80704 *help/aCGH.test.html
45eeb98f59069caf02c305c2153b3660 *help/aliases.rds
dde29f6de192d473b5180c95cb1d6b46 *help/as.matrix.dist.html
474f80d30341642cbdbb0cab5a4e7e89 *help/changeProp.func.html
474f80d30341642cbdbb0cab5a4e7e89 *help/changeProp.overall.func.html
906c8029a778215150aad4d5095c42b2 *help/clone.names+3C-.html
906c8029a778215150aad4d5095c42b2 *help/clone.names.html
e8f727ae64b33771e49179903e167b8d *help/clones.info.ex.html
906c8029a778215150aad4d5095c42b2 *help/clones.info.html
08c2af363deaab0c0b3e32086e09c7e8 *help/clusterGenome.html
906c8029a778215150aad4d5095c42b2 *help/col.names+3C-.aCGH.html
906c8029a778215150aad4d5095c42b2 *help/col.names.aCGH.html
906c8029a778215150aad4d5095c42b2 *help/colnames+3C-.aCGH.html
906c8029a778215150aad4d5095c42b2 *help/colnames.aCGH.html
e8f727ae64b33771e49179903e167b8d *help/colorectal.html
73140c4914340eaaa50999faece5181e *help/combine.func.html
d7b823c47e4fb00cc61c869eca076e77 *help/computeSD.Samples.html
d7b823c47e4fb00cc61c869eca076e77 *help/computeSD.func.html
906c8029a778215150aad4d5095c42b2 *help/corna.html
906c8029a778215150aad4d5095c42b2 *help/create.aCGH.html
474f80d30341642cbdbb0cab5a4e7e89 *help/create.resT.html
906c8029a778215150aad4d5095c42b2 *help/dim.aCGH.html
3cab1dac20b41e47ceb3ce632ed5a3ba *help/dotify.names.html
906c8029a778215150aad4d5095c42b2 *help/ex.acgh.hmm.html
3cab1dac20b41e47ceb3ce632ed5a3ba *help/extract.clones.info.html
6e3a00e803609866ae3800a4545a9e38 *help/fga.func.html
ff0ffce455fee118aac52d18d6260701 *help/find.genomic.events.html
dde29f6de192d473b5180c95cb1d6b46 *help/find.hmm.states.html
9ac57d0f23f4c715d2e741e04de280cc *help/findAber.func.html
ca2bf67a84a7966b8e17eff463da958b *help/findAmplif.func.html
80241aaecb79b525ce820051e08a5689 *help/findOutliers.func.html
9197ece5d87c3f6a34248c4bfe378242 *help/findTrans.func.html
906c8029a778215150aad4d5095c42b2 *help/floorFunc.html
5f14a790f106112ef280f74f017ccdb4 *help/gainLoss.html
906c8029a778215150aad4d5095c42b2 *help/genomic.events+3C-.html
906c8029a778215150aad4d5095c42b2 *help/genomic.events.html
faf2dd88488cf8fb8d323260ea921bb0 *help/heatmap.html
906c8029a778215150aad4d5095c42b2 *help/hmm+3C-.html
906c8029a778215150aad4d5095c42b2 *help/hmm.html
906c8029a778215150aad4d5095c42b2 *help/hmm.merged+3C-.html
906c8029a778215150aad4d5095c42b2 *help/hmm.merged.html
dde29f6de192d473b5180c95cb1d6b46 *help/hmm.run.func.html
cde45d215b1bcecfec371b55605a04bc *help/human.chrom.info.Jul03.html
acb50577acde38d6bf32ac8bf5ac608a *help/human.chrom.info.May04.html
16b5c91b1558a751a91541e04670fa27 *help/impute.HMM.html
c2926721673e7c90a85848c6035fda7e *help/impute.lowess.html
906c8029a778215150aad4d5095c42b2 *help/is.aCGH.html
906c8029a778215150aad4d5095c42b2 *help/is.even.html
906c8029a778215150aad4d5095c42b2 *help/is.odd.html
474f80d30341642cbdbb0cab5a4e7e89 *help/lengthGain.na.html
474f80d30341642cbdbb0cab5a4e7e89 *help/lengthLoss.na.html
906c8029a778215150aad4d5095c42b2 *help/lengthNumFunc.html
e8f727ae64b33771e49179903e167b8d *help/log2.ratios.ex.html
906c8029a778215150aad4d5095c42b2 *help/log2.ratios.html
906c8029a778215150aad4d5095c42b2 *help/log2.ratios.imputed+3C-.html
906c8029a778215150aad4d5095c42b2 *help/log2.ratios.imputed.html
a6d5a45595e1bb4e24f96426cfd7afc5 *help/maPalette.html
3cab1dac20b41e47ceb3ce632ed5a3ba *help/maxdiff.func.html
906c8029a778215150aad4d5095c42b2 *help/maxna.html
df5130fea626b29c6f7ebf26d299e2de *help/mergeFunc.html
df5130fea626b29c6f7ebf26d299e2de *help/mergeHmmStates.html
73140c4914340eaaa50999faece5181e *help/mergeLevels.html
3cab1dac20b41e47ceb3ce632ed5a3ba *help/mincorr.func.html
906c8029a778215150aad4d5095c42b2 *help/minna.html
8cc72284e55f3b378578b14e56c80704 *help/mt.maxT.html
8cc72284e55f3b378578b14e56c80704 *help/mt.minP.html
906c8029a778215150aad4d5095c42b2 *help/ncol.aCGH.html
906c8029a778215150aad4d5095c42b2 *help/nrow.aCGH.html
906c8029a778215150aad4d5095c42b2 *help/num.chromosomes.html
906c8029a778215150aad4d5095c42b2 *help/num.clones.html
906c8029a778215150aad4d5095c42b2 *help/num.samples.html
fa945fb90031abaa920bbed5a8fdaf70 *help/paths.rds
e8f727ae64b33771e49179903e167b8d *help/pheno.type.ex.html
906c8029a778215150aad4d5095c42b2 *help/phenotype+3C-.html
906c8029a778215150aad4d5095c42b2 *help/phenotype.html
906c8029a778215150aad4d5095c42b2 *help/plot.aCGH.html
a6d5a45595e1bb4e24f96426cfd7afc5 *help/plotCGH.func.html
dde29f6de192d473b5180c95cb1d6b46 *help/plotCGH.hmm.func.html
dde29f6de192d473b5180c95cb1d6b46 *help/plotChrom.grey.samples.func.html
dde29f6de192d473b5180c95cb1d6b46 *help/plotChrom.hmm.func.html
08c2af363deaab0c0b3e32086e09c7e8 *help/plotChrom.html
dde29f6de192d473b5180c95cb1d6b46 *help/plotChrom.samples.func.html
474f80d30341642cbdbb0cab5a4e7e89 *help/plotFreqGivenStat.html
474f80d30341642cbdbb0cab5a4e7e89 *help/plotFreqStat.html
474f80d30341642cbdbb0cab5a4e7e89 *help/plotFreqStatColors.html
474f80d30341642cbdbb0cab5a4e7e89 *help/plotFreqStatGrey.html
a6d5a45595e1bb4e24f96426cfd7afc5 *help/plotGene.html
a6d5a45595e1bb4e24f96426cfd7afc5 *help/plotGeneSign.html
a6d5a45595e1bb4e24f96426cfd7afc5 *help/plotGenome.html
da283f1eb29ef10b88628a067ed7ae9f *help/plotHmmStates.html
da283f1eb29ef10b88628a067ed7ae9f *help/plotHmmStatesNew.html
7f5a7ebb260caf157bc638ded93a08be *help/plotSummaryProfile.html
08c2af363deaab0c0b3e32086e09c7e8 *help/plotValChrom.html
08c2af363deaab0c0b3e32086e09c7e8 *help/plotValGenome.html
474f80d30341642cbdbb0cab5a4e7e89 *help/plotfreq.givenstat.final.colors.func.html
474f80d30341642cbdbb0cab5a4e7e89 *help/plotfreq.stat.chrom.final.func.html
474f80d30341642cbdbb0cab5a4e7e89 *help/plotfreq.stat.final.func.html
474f80d30341642cbdbb0cab5a4e7e89 *help/plotfreqGivenStatFinalColors.html
08c2af363deaab0c0b3e32086e09c7e8 *help/plotvalChrom.func.html
906c8029a778215150aad4d5095c42b2 *help/print.aCGH.html
474f80d30341642cbdbb0cab5a4e7e89 *help/prop.na.html
474f80d30341642cbdbb0cab5a4e7e89 *help/propGain.na.html
474f80d30341642cbdbb0cab5a4e7e89 *help/propLoss.na.html
906c8029a778215150aad4d5095c42b2 *help/propNumFunc.html
3cab1dac20b41e47ceb3ce632ed5a3ba *help/read.Sproc.files.html
906c8029a778215150aad4d5095c42b2 *help/row.names+3C-.aCGH.html
906c8029a778215150aad4d5095c42b2 *help/row.names.aCGH.html
906c8029a778215150aad4d5095c42b2 *help/rownames+3C-.aCGH.html
906c8029a778215150aad4d5095c42b2 *help/rownames.aCGH.html
906c8029a778215150aad4d5095c42b2 *help/sample.names+3C-.html
906c8029a778215150aad4d5095c42b2 *help/sample.names.html
906c8029a778215150aad4d5095c42b2 *help/sd.samples+3C-.html
906c8029a778215150aad4d5095c42b2 *help/sd.samples.html
dde29f6de192d473b5180c95cb1d6b46 *help/smoothData.func.html
c0ab3a9fb7d2045db82fcc9d05f5ba6e *help/states.hmm.func.html
906c8029a778215150aad4d5095c42b2 *help/subset.hmm.html
906c8029a778215150aad4d5095c42b2 *help/subset.hmm.merged.html
bac9d1b8a237e8589790b769548bee6e *help/summarize.clones.html
906c8029a778215150aad4d5095c42b2 *help/summary.aCGH.html
474f80d30341642cbdbb0cab5a4e7e89 *help/table.bac.func.html
77a2e7b9f514b6767f0cb3196ff721dd *help/threshold.func.html
dde29f6de192d473b5180c95cb1d6b46 *help/thresholdData.func.html
faab7234db3542e40f9c0a3ce4f28c75 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
3e5a2ba155e5c17c0dbbd23a719cac31 *html/aCGH.html
b82e6f846456f0e12824d5ec15adad5f *html/aCGH.process.html
d3a58937cb5b26b2e9c34d76b09412b6 *html/aCGH.read.Sprocs.html
8894a9aa60964e95155d0c8c4a12cc43 *html/aCGH.test.html
e829efbe010bd06e643ff6dc107a0f80 *html/clusterGenome.html
2bda4f8d0b4b919ecf30a948efe153a9 *html/colorectal.html
5f7e809da9679df0ab64018b773aae5e *html/computeSD.func.html
60d3dd7774de1bca2bb13d7b3800be1c *html/fga.func.html
a4f90f7c9dbabc0a9b6f5862f550eb5d *html/find.genomic.events.html
3bf8b56e5eac9972c5eeba5313c9b99b *html/find.hmm.states.html
ae8998ac535113d05f01cd650dfa1955 *html/findAber.func.html
0fdb2c55396688cc450d023d63ea3f12 *html/findAmplif.func.html
708b5942493103a7658a0acb2ff233ac *html/findOutliers.func.html
977eb2f1409bc82695eccfa85a8e59f4 *html/findTrans.func.html
ced27dd45d76f31ab25fa3c09914dcc1 *html/gainLoss.html
4aec0bc1840f86fd0f163282a3e15b39 *html/heatmap.html
4cb1d0eaf0b1ea7734fe7f22945ba180 *html/human.chrom.info.Jul03.html
a9690db600a500d6b502090ea4ef2192 *html/human.chrom.info.May04.html
430609a944e25db390d8ecf28e1e2d8b *html/impute.HMM.html
f7c6c98a47f20d4586944323bcacc6db *html/impute.lowess.html
fbbb256740d5ee57f47d1646c0ccbd04 *html/mergeFunc.html
a4165bdedc5a8ba748a8263de66e3fa1 *html/mergeLevels.html
f2f5233a436e3dcb3f8af6e2aaeb20a6 *html/plotFreqStat.html
a4df924899994533baa8bc200e467589 *html/plotGenome.html
2e6a467f03a2f5875d0d9c6272af4469 *html/plotHmmStates.html
8eb64d4b87303cf680acabf244009e5e *html/plotSummaryProfile.html
f79f8cb4d8b2cbb265d05218c202c350 *html/states.hmm.func.html
b6dfaef73a8b18874643791b54d4eeb3 *html/summarize.clones.html
9d616078a74aad0920e1bbb91dcefabe *html/threshold.func.html
d003fc3aebe1f4fc4e0c1d2f6b29e96d *libs/i386/aCGH.dll
d12fcb2cf52ecc7fa3e1e7cabdc2f41e *libs/x64/aCGH.dll
