.secretionSignalAnalysis {abseqR} | R Documentation

## Secretion signal analysis

### Description

Generates all the required plots for Secretion signal analysis. This includes upstream length distributions and upstream sequence validity.

### Usage

    .secretionSignalAnalysis(secDirectories, secOut, sampleNames,
      combinedNames, mashedNames, upstreamRanges, .save = TRUE)

### Arguments

`secDirectories` | list type. Secretion signal directories where files are located
`secOut` | string type. Where to dump output
`sampleNames` | vector type. 1-1 with secDirectories
`combinedNames` | string type. Title friendly string
`mashedNames` | string type. File name friendly string
`upstreamRanges` | list type. Upstream ranges for each sample. If length(secDirectories) > 1, the plots will only be generated for upstream ranges that are present in ALL samples. (i.e. the intersection)
`.save` | logical type, save Rdata?

### Value

none

[Package abseqR version 1.12.0 Index]