.plotPrimerIGVStatus {abseqR} | R Documentation

## Plots, for a given `category` and `pend`, the `primer` IGV indelled distribution in a bar plot

### Description

Plots the abundace of indelled primers relative to IGV germlines

### Usage

    .plotPrimerIGVStatus(primer, pend, category, primerDirectories,
      sampleNames, primerOut, combinedNames, mashedNames, .save = TRUE)

### Arguments

`primer` | string, primer name
`pend` | string, either 3 or 5 (primer end)
`category` | string, either "all", "productive", or "outframe"
`primerDirectories` | string type. Path to primer analysis directory
`sampleNames` | vector type. 1-1 with primerDirectories
`primerOut` | string type. output directory
`combinedNames` | string type. Title friendly "combined" sample names
`mashedNames` | string type. File friendly "mashed-up" sample names
`.save` | logical type. Save Rdata?

### Value

None

[Package abseqR version 1.12.0 Index]