.plotPrimerIntegrity {abseqR} | R Documentation

## Plots the distribution of primer integrity for a given `category` and 5' or 3' `pend`

### Description

Plots the distribution of primer integrity for a given `category` and 5' or 3' `pend`

### Usage

    .plotPrimerIntegrity(primerIntegrity, pend, category, primerDirectories,
      sampleNames, primerOut, combinedNames, mashedNames, .save = TRUE)

### Arguments

`primerIntegrity` | string. One of "stopcodon", "integrity", "indelled", "indel_pos"
`pend` | string, either 3 or 5 (primer end)
`category` | string, either "all", "productive", or "outframe"
`primerDirectories` | string type. Path to primer analysis directory
`sampleNames` | vector type. 1-1 with primerDirectories
`primerOut` | string type. output directory
`combinedNames` | string type. Title friendly "combined" sample names
`mashedNames` | string type. File friendly "mashed-up" sample names
`.save` | logical type. Save Rdata?

### Value

None

[Package abseqR version 1.12.0 Index]