.alignQualityHeatMaps {abseqR} | R Documentation

## Plots all 5 alignment quality heatmaps

### Description

Plots alignment quality vs:

- mismatches

- gaps

- bitscore

- percent identity

- subject start

### Usage

    .alignQualityHeatMaps(abundanceDirectory, sampleName)

### Arguments

`abundanceDirectory` | character type. fully qualified path to abundance directory
`sampleName` | character type. sample name

### Value

list of ggplotly heatmaps

[Package abseqR version 1.12.0 Index]