setRealCN {beadarraySNP} | R Documentation

## Integrate state information into SNP object

### Description

Set calculated values of copy numbers in `inferred` element of `AssayData` slot

### Usage

    setRealCN(object, sample, cn.sum, subsample="OPA")

### Arguments

`object` | class SnpSetIllumina
`sample` | sample identifier
`cn.sum` | list, see `createCNSummary`
`subsample` | "OPA"

### Value

SnpSetIllumina object with `inferred` element of `AssayData` slot set

### Author(s)

Jan Oosting

### See Also

`segmentate, alterCN, plotGoldenGate4OPA createCNSummary`

[Package beadarraySNP version 1.60.0 Index]