BeadstudioQC {beadarraySNP} | R Documentation

## Quality control of Beadstudio report files

### Description

When data has been imported using a Beadstudio samplesheet and reportfile, these functions can be used to generate quality measures

### Usage

    BeadstudioQC(object, QClist = list(), arrayType = "Sentrix96")
    pdfBeadstudioQC(QClist, basename = "beadstudio", by = 10)

### Arguments

`object` | `SnpSetIllumina` object.
`QClist` | list, result of previous call to `BeadstudioQC`
`arrayType` | character, type of array
`basename` | character, prefix for PDF files. This name will be added before the Barcode of the chip
`by` | integer, number of samples in barplot, see `reportSamplePanelQC`

### Value

The `BeadstudioQC` function generates a list of `QCIllumina` objects The `pdfBeadstudioQC` function generates a pdf-file for each `QCIllumina` object in the list

### Author(s)

J. Oosting

### See Also

`pdfQC`,`calculateQCarray`

[Package beadarraySNP version 1.60.0 Index]