checkNormalization {benchdamic} | R Documentation

## checkNormalization

### Description

Check if the normalization function's name and the method's name to compute normalization/scaling factors are correctly matched.

### Usage

    checkNormalization(fun, method, ...)

### Arguments

`fun` | a character with the name of normalization function (e.g. "norm_edgeR", "norm_DESeq2", "norm_CSS"...).
`method` | a character with the normalization method (e.g. "TMM", "upperquartile"... if the `fun` is "norm_edgeR").
`...` | other arguments if needed (e.g. for `norm_edgeR` normalizations).

### Value

a list object containing the normalization method and its parameters.

### See Also

`setNormalizations`, `norm_edgeR`, `norm_DESeq2`, `norm_CSS`, `norm_TSS`

### Examples

    # Check if TMM normalization belong to "norm_edgeR"
    check_TMM_normalization <- checkNormalization(fun = "norm_edgeR",
        method = "TMM")

[Package benchdamic version 1.0.0 Index]