ps_plaque_16S {benchdamic} | R Documentation

## (Data) 60 Gingival Plaque samples of 16S rRNA (HMP 2012)

### Description

A demonstrative purpose dataset containing microbial abundances for a total of 88 OTUs. The 60 Gingival Plaque paired samples belong to the Human Microbiome Project. This particular subset contains 30 Supragingival and 30 Subgingival Plaque samples from the `SEX = "Male"`, `RUN_CENTER = "WUCG"`, and `VISITNO = "1"` samples. It is possible to obtain the same dataset after basic filters (remove taxa with zero counts) and collapsing the counts to the genus level; `HMP16SData` Bioconductor package was used to download the data.

### Usage

    data(ps_plaque_16S)

### Format

An object of class `phyloseq`

[Package benchdamic version 1.0.0 Index]