bigmelon-package {bigmelon} | R Documentation

## Write large-scale Illumina array datasets to CoreArray Genomic Data Structure (GDS) data files for efficient storage, access, and modification.

### Description

Functions for storing Illumina array data as CoreArray Genomic Data Structure (GDS) data files (via the gdsfmt package), appending these files , and applying array normalization methods from the wateRmelon package.

### Details

Package: | bigmelon
Type: | Package
Version: | 1.13.8
Date: | 2020-02-24
License: | GPL3

### Author(s)

Tyler Gorrie-Stone Leonard C Schalkwyk, Ayden Saffari, Karim Malki. Who to contact: <t.gorrie-stone@qmul.ac.uk>, <lschal@essex.ac.uk>

### References

[1]Tyler J Gorrie-Stone, Melissa C Smart, Ayden Saffari, Karim Malki, Eilis Hannon, Joe Burrage, Jonathan Mill, Meena Kumari, Leonard C Schalkwyk: Bigmelon: tools for analysing large DNA methylation datasets, Bioinformatics, Volume 35, Issue 6, 15 March 2019, Pages 981-986. https://doi.org/10.1093/bioinformatics/bty713

[2]Pidsley R, Wong CCY, Volta M, Lunnon K, Mill J, Schalkwyk LC: A data-driven approach to preprocessing Illumina 450K methylation array data. BMC genomics, 14(1), 293.

### See Also

`es2gds`, `dasen`, `wateRmelon`, `gdsfmt`.

[Package bigmelon version 1.20.0 Index]