getBioassaySetByCids {bioassayR} | R Documentation

## Create `bioassaySet` sparse matrix object with activity data only for specified compounds

### Description

Takes a list of compounds, and creates a `bioassaySet` sparse matrix object with the activity data for these compounds only, not including activity data from other compounds in the same assays.

### Usage

    getBioassaySetByCids(database, cids)

### Arguments

`database` | A `BioassayDB` database to query.
`cids` | One or more compounds IDs of interest.

### Value

A `bioassaySet` object containing data from the specified cids.

### Author(s)

Tyler William H Backman

### Examples

    ## connect to a test database
    extdata_dir <- system.file("extdata", package="bioassayR")
    sampleDatabasePath <- file.path(extdata_dir, "sampleDatabase.sqlite")
    sampleDB <- connectBioassayDB(sampleDatabasePath)

    ## retrieve activity data on 3 compounds
    activitySet <- getBioassaySetByCids(sampleDB, c("2244","3715","237"))
    activitySet

    ## disconnect from sample database
    disconnectBioassayDB(sampleDB)

[Package bioassayR version 1.32.1 Index]