f3ab9da1d1241a0146e5974d4595f9c8 *DESCRIPTION
e9f527e8b3e7674071d95537158137ae *INDEX
cb1554ea5a11c101a80adad21a488108 *LICENSE
609bd3596945ddb8033ea3834c94ab73 *Meta/Rd.rds
8503e676975364d771072956cdbca633 *Meta/features.rds
a953b21128d8f78c6a76509b247085f6 *Meta/hsearch.rds
264c2df054eaff487401c0977b14ba4f *Meta/links.rds
71057370d2085bf382a729d262abf26b *Meta/nsInfo.rds
e7f8dad7af6093d47ebc09b9c254c014 *Meta/package.rds
bf2df6147b70db649732aaa908215d37 *Meta/vignette.rds
75db7014d0793c6c824f56dbbd446a41 *NAMESPACE
9580ba6f68606838a97e48ded311d70d *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/breakpointR
f6fdbbe9ad8d1870ec4ab49e4c15251c *R/breakpointR.rdb
8e6a4eadb1e8dc373c0d5171403ad8dd *R/breakpointR.rdx
f6a4f94a98e7b546209056319cf37d2d *doc/breakpointR.R
2cd20b9d735055deb96d4966d203a46e *doc/breakpointR.Rnw
3ff104abc993f098e7643689799b74a0 *doc/breakpointR.pdf
32aad373211680a0bf8b28c7b761b902 *doc/index.html
cf22531fec83d69997bd8cd890c10144 *help/AnIndex
3bc1734ffc8decb7868e0968eb3f384b *help/BreakPoint.html
97acf537742ca6a1cac5b9d5b71fa0f7 *help/GenotypeBreaks.html
4dea81e89a8d9187ecb794b2648f63bf *help/aliases.rds
ef9f945c5bf5df21f7fb82f786c16d02 *help/breakSeekr.html
a94c5d97561a2f55b78d71f2fb6b166e *help/breakpointR-package.html
e8b22c350877c667ada23fddf28b73ff *help/breakpointR.html
1f9c323ecf0e330614936274e1ff8e7d *help/breakpointR.rdb
034607632bec74834f6c3472f195f311 *help/breakpointR.rdx
673b745492b45f9939d9e0faa855ccfd *help/breakpointr2UCSC.html
fd467d23984ce48abf850596faa6de93 *help/collapseBins.html
72f9f76516cf4eba6384d5e3cfacfd08 *help/confidenceInterval.binomial.html
bfc29161add6a61d40f285988fe3f93d *help/confidenceInterval.html
bc7d80a4be477df3f73421bdd298e8dc *help/createCompositeFile.html
e34b58e5148f6ce2f14e19d7a5a6b294 *help/deltaWCalculator.html
18059c1cb4d5db90b68e183feec9bc3b *help/deltaWCalculatorVariousWindows.html
752696506c09cd5a8cfb715ff5f33d02 *help/exportRegions.html
f03bfae725a0db82b7f20db6ee20208d *help/genotype.binom.html
25d3964f026ddfc8e3adcbf6281e88fe *help/genotype.fisher.html
97acf537742ca6a1cac5b9d5b71fa0f7 *help/genotyping.html
30d70e0dee1ba2f6a17d41dfa54f6615 *help/hotspotter.html
82939ab13897db1029504c8acbfcbdd9 *help/insertchr.html
9dd45db8f4ac809a17a3958603e53076 *help/loadFromFiles.html
aca4d391e5b569e7d9b0f83c1abadc2d *help/paths.rds
293a3d0e042472fff8ed87c21d089a84 *help/plotBreakpoints.html
8fd86ac72e6c2dd2fbb7fde4ffed115d *help/plotBreakpointsPerChr.html
b597e5dbb3c8c2d0d5b4939bec597dff *help/plotHeatmap.html
4c1b6d3c4e8efd8d34ab359675c4843a *help/ranges2UCSC.html
91cc33e42e1bdaaa747b8449ed925666 *help/readBamFileAsGRanges.html
a9e65c98756168b2381a4e60f229c09b *help/readConfig.html
b4847e3b671990a09e0309042f3d4558 *help/removeDoubleSCEs.html
1d30af4e90c4dc963a150808d8ecbf32 *help/removeReadPileupSpikes.html
042b841f95a1c70c4db740433bc2300d *help/runBreakpointr.html
59e58920efa0ef084ea774c2abe37646 *help/summarizeBreaks.html
fdc3eaa014f764c9204fe8296f4a90f9 *help/synchronizeReadDir.html
43221971a8f3814de51a5659daec538b *help/transCoord.html
054bddd9eca11ba93d723de531a8ed8d *help/writeConfig.html
f9a0e83a9db24f0829e80ae280a4e484 *html/00Index.html
d315e0bbda24926ff23dda4b6283c9be *html/BreakPoint.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
d9a8b7be3523b720a82e2786e5bb3686 *html/breakSeekr.html
2620e93fab25e1ac3087229413d91c39 *html/breakpointR-package.html
cfda9e64a5c0622e09bea1eaf68ba6ed *html/breakpointr.html
e56cbb5ed05022026b396fc9ef863f0a *html/breakpointr2UCSC.html
1506834d56752dcc32032e6e7f579718 *html/collapseBins.html
abaa8856a927340e496b44c398222cb1 *html/confidenceInterval.binomial.html
ac3a859a365108a6ebd79431ede473db *html/confidenceInterval.html
325a520ab25f5c15e6f7f76593056d70 *html/createCompositeFile.html
11f5a9ad3b171b02909667e54af7434e *html/deltaWCalculator.html
2318f2106e9b1b6719da0963e5167aff *html/deltaWCalculatorVariousWindows.html
deb51e22f3ac444ff2ff521846304cdc *html/exportRegions.html
d995b08b28241600d781c7253603ed33 *html/genotype.binom.html
c9c21fe859568e2f346a2ceae68162ba *html/genotype.fisher.html
e3307b2f9f54eaea0138c4317f2fe9eb *html/genotyping.html
e023150a1502d032b475c2ae0e560b27 *html/hotspotter.html
6c20a9a59733f531f134ddf8e97ea37d *html/insertchr.html
39435311590379b273ca18b041a046c5 *html/loadFromFiles.html
1f6690e6db430bae3118857962ef2ba1 *html/plotBreakpoints.html
7f344b9ac126eb576a1ed866159d4c06 *html/plotBreakpointsPerChr.html
a6aa83dc9f5bbd6dc24cd6686892bf31 *html/plotHeatmap.html
be8eb8a7e8704c4abd4cd0da227fbfd8 *html/ranges2UCSC.html
c79b64cc2b0bb18373b7a60116e372ad *html/readBamFileAsGRanges.html
a7424a47e5906532f994dce4dac4fc17 *html/readConfig.html
5fc1579020b5f0cac58a5b3805294edc *html/removeDoubleSCEs.html
20152c6ac694c9442b4f07f88ae4dd6a *html/removeReadPileupSpikes.html
095aa505f0b326d8dfece8300ef80355 *html/runBreakpointr.html
4fce7d7a92da255b1c9246a8fe3ea768 *html/summarizeBreaks.html
7fee3741cc5193ea8bd3963263fd2b59 *html/synchronizeReadDir.html
66a0ce4f68a5e37668711a909f23bd41 *html/transCoord.html
a2b7cb1c9468c07d1ac182ae0673e50c *html/writeConfig.html
