prepareGSEAgenesets {cTRAP} | R Documentation

## Prepare GSEA gene sets

### Description

Prepare GSEA gene sets

### Usage

    prepareGSEAgenesets(input, geneSize)

### Arguments

`input` | `Named numeric vector` of differentially expressed genes whose names are gene identifiers and respective values are a statistic that represents significance and magnitude of differentially expressed genes (e.g. t-statistics); or `character` of gene symbols composing a gene set that is tested for enrichment in reference data (only used if `method` includes `gsea`)
`geneSize` | Numeric: number of top up-/down-regulated genes to use as gene sets to test for enrichment in reference data; if a 2-length numeric vector, the first index is the number of top up-regulated genes and the second index is the number of down-regulated genes used to create gene sets; only used if `method` includes `gsea` and if `input` is not a gene set

### Value

List of gene sets

[Package cTRAP version 1.12.0 Index]