2799d13013cd0d203dc70e7162523167 *DESCRIPTION
1b1474442473c4d14baa6acf93cfdba6 *INDEX
6a9d904544954e1ef59732c5dae2454e *Meta/Rd.rds
3d938121c58dff1e8ba70da1eadcc027 *Meta/data.rds
8503e676975364d771072956cdbca633 *Meta/features.rds
b73b307c1994859f3883e9fc54814c8f *Meta/hsearch.rds
c20a301da065910444b5fe92f8666e88 *Meta/links.rds
9b88960f1d03481a0a84dafe6a1bae54 *Meta/nsInfo.rds
d9db027c7daeb05d33807558a64b6478 *Meta/package.rds
69e416957d50a2e6b81dd5b4bfc9f37d *Meta/vignette.rds
8406fd1414247da7405904c2546ad3c6 *NAMESPACE
d6c68f1fe41ced6e98a766a3757313da *R/chipseq
6a9e7fe0706d42c1201012032516cde9 *R/chipseq.rdb
0f16ec6efbff75342ec446f2b29fc115 *R/chipseq.rdx
c67ac49dbe2a5c389a1b642feed5cbc9 *Scripts/AntibodyComparison.Rnw
630a273418c2f9ea72fc5134e7ec70dd *Scripts/CTCFBindingSites.R
ca9cf8135dd0e90c84a79c7d25b67f8e *Scripts/CTCF_ERV.R
aee97330bc6fc5325ce931bed2ce78db *Scripts/CopyNumber.Rnw
b9fdf9ddd9d25837d91b84181d44a947 *Scripts/Islands.Rnw
d3e0e7d6d67905e3f34b7b3115d6729a *Scripts/MyoD.R
70ed9c49dec4afdb22fde785402b70ba *Scripts/PairedEndComparison.Rnw
dcb4e37001f03145920d1c8ff3117e0f *Scripts/PeakContextHuman.Rnw
e22d7dbd060325161369d0e7e2e58809 *Scripts/PeakContextMouse.Rnw
bf012dbfcfee1aee1d476b131ff815b6 *Scripts/PeakCutoff.Rnw
027314cba8b874dc1d337a24048faf6a *Scripts/PeakModel.Rnw
10a39afb911fbcfd768ce3f473074e6e *Scripts/PeakReproducibility.Rnw
fc5f8df77609407d4dde159745ead9de *Scripts/PeaksByCopyNumber.Rnw
727166198a38cc8d25d326ca1eb40ec4 *Scripts/RateComparison.Rnw
aa70f1fa6f051112a2d02f42a95ce676 *Scripts/ReadAndSave54.R
ae7894a5b856dbaf4eb47efb18a37aaa *Scripts/ReadAndSaveCTCF.R
42e617263ffdc34e7ca72e2812520574 *Scripts/ReadAndSaveData.R
05caa000363574dcdbb4f33f43adc444 *Scripts/ReadAndSaveSimulation.R
0499bfe7ca2da5b930300dcea653fe3f *Scripts/SolexaSim.R
8418412635db910c56247de35566e5e9 *Scripts/abc.rda
b2b3308f0d60517c9e1d4d10aadc2ac9 *Scripts/antibody_comparison.R
ed4f51f8bcebaf4eeeb5c96ff4879c24 *Scripts/dePeaks.R
f7d49434a22023a99f7926fb6ee4f6e6 *Scripts/diffpeak.R
3ed9c551e8103a45b28b99eb559a484f *Scripts/diffpeaks.R
837228bc953727b032e40cbb6205a57d *Scripts/estimate_fragment_size.R
a06c7dabaad7ed64c565327650ca8cc9 *Scripts/fibroblasts.R
e72faaaedf165cab4014877a5c052884 *Scripts/getIsochores.R
3783000fdd3bf5e218849c3c4f13125f *Scripts/hmm.R
4b7c58b557ccce7b42ccc011b4d82021 *Scripts/human-islands.R
eeaf2ff4f62313033a80205dee813c86 *Scripts/isochore_comparison.R
f7328263dd15bd2151f28b1608cbbb49 *Scripts/isochores.mm9.rda
c7a667f5161cfde7f01daaa6d4caa464 *Scripts/negbinomial.R
a2ca467d2433f490d5cc6b1343690bb2 *Scripts/peakContext.R
786298cc4d4d8d7fba7ac8a3cdf3bdc5 *Scripts/peak_mle.R
e14f736999fe4d70f015fb4d4e39ba68 *Scripts/poisson.R
2d307d1468ebac6eea2f052f07bb4e30 *Scripts/simulate.R
bf32b8fbb5ae9f6aca83195bf78deae3 *Scripts/singletons.Rnw
41c6ab6fd784ed7445193929413afc97 *Scripts/solexa54.R
601e7f10d36f8c8da2d856f410aef879 *data/cstest.rda
ecf5bb4234b028fcab1fdb3c88b52ab0 *data/datalist
2427feeb636619e50d1023c80511d998 *doc/Workflow.R
219e82a7af0f2e1d04933c8b87e6166a *doc/Workflow.Rnw
f9a3fef0396b4d214f500c70d6c2b726 *doc/Workflow.pdf
164335293e9d7f04a2a2de7e7d810fa3 *doc/index.html
7d4b71aca2e2ed20799a1338b54b87bb *help/AnIndex
993db2f07442998d72ed2307f3dfda82 *help/aliases.rds
2822be51e9850c618bf34ad9e43ffc4e *help/basesCovered.html
aec2c1e437074ccbc2e23fa5bc2a9d08 *help/chipseq.rdb
db0656244e770e7d3559d7859099d137 *help/chipseq.rdx
02e7478f7b7fecc9f8f0f7f113a7ea71 *help/chipseqFilter.html
1f82e44123877ea6efc8fdb6c084f2e3 *help/coverageplot.html
bbb72fb43945de552bc8aeb4eafb8cf7 *help/cstest.html
2822be51e9850c618bf34ad9e43ffc4e *help/densityCorr+2CGenomicRanges.html
2822be51e9850c618bf34ad9e43ffc4e *help/densityCorr+2Clist.html
2822be51e9850c618bf34ad9e43ffc4e *help/densityCorr.html
d7f5d186a71a0b4b1562230f6ae149ee *help/diffPeakSummary+2CRleViewsList+2CRleViewsList-method.html
d7f5d186a71a0b4b1562230f6ae149ee *help/diffPeakSummary.html
2822be51e9850c618bf34ad9e43ffc4e *help/estimate.mean.fraglen+2CAlignedRead-method.html
2822be51e9850c618bf34ad9e43ffc4e *help/estimate.mean.fraglen+2CGRanges-method.html
2822be51e9850c618bf34ad9e43ffc4e *help/estimate.mean.fraglen.html
a7654a2687ea837740dc767923c741bb *help/islandDepthPlot.html
c62ce901cd224684cd199aa14b2f4084 *help/laneSubsample.html
4c037fc5bee6d1bb6145fed6bf062581 *help/paths.rds
917185cc57a823814b41f308b11416ea *help/peakCutoff.html
a20d911322b0ab0783533c93b29d2cb3 *help/peakSummary+2CRleViews-method.html
a20d911322b0ab0783533c93b29d2cb3 *help/peakSummary+2CRleViewsList-method.html
a20d911322b0ab0783533c93b29d2cb3 *help/peakSummary-methods.html
a20d911322b0ab0783533c93b29d2cb3 *help/peakSummary.html
2822be51e9850c618bf34ad9e43ffc4e *help/sparse.density.html
b7b911ba071c4b554d529dfddb8a2c30 *help/subsetSummary.html
45b1a84abf029868673ffd3facd3b291 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
a003dbbaff60b407fa234b9e5edc50eb *html/chipseqFilter.html
57fb4f6a69187b33acca7e6a8da5f85e *html/coverageplot.html
8a0fbcdf7d835adcaa38b180634d1a00 *html/cstest.html
a50ca3c5655dce6397465cae4a0f4571 *html/diffPeakSummary.html
66f2c1db94746620ec18c64a059f2342 *html/estimate.mean.fraglen.html
44d8116c2ce4a12f7f1a3d157aa04156 *html/islandDepthPlot.html
1827c4c4a5f7fd9356e18cc7d5cc5674 *html/laneSubsample.html
33cdb25e866554ba7cf89c574a9d2461 *html/peakCutoff.html
d3eb6ce82ec92f689fdece04d2df8a29 *html/peakSummary-methods.html
65a3ece792d54c4502587d03d073bd35 *html/subsetSummary.html
0b7cdada70b231e70db175d65a6ae12a *libs/i386/chipseq.dll
ec1420f9933f39831bcbdfebab6c3934 *libs/x64/chipseq.dll
