backSplicedJunctions {circRNAprofiler} | R Documentation

## backSplicedJunctions

### Description

A data frame containing genomic coordinates (genome assembly hg19) of circRNAs detected by three detection tools (CircMarker(cm), MapSplice2 (m) and NCLscan (n)) in the human left ventricle tissues of 3 controls, 3 patients with dilated cardiomyopathies (DCM) and 3 patients with hypertrophic cardiomyopathies (HCM). This data frame was generated with `getBackSplicedJunctions`.

### Usage

    data(backSplicedJunctions)

### Format

A data frame with 63521 rows and 16 columns

id

  Unique identifier

gene

  is the gene name whose exon coordinates overlap that of the given back-spliced junctions

strand

  is the strand where the gene is transcribed

chrom

  the chromosome from which the circRNA is derived

startUpBSE

  is the 5' coordinate of the upstream back-spliced exon in the transcript. This corresponds to the back-spliced junction / acceptor site

endDownBSE

  is the 3' coordinate of the downstream back-spliced exon in the transcript. This corresponds to the back-spliced junction / donor site

tool

  are the tools that identified the back-spliced junctions

C1

  Number of occurences of each circRNA in control 1

C2

  Number of occurences of each circRNA in control 2

C3

  Number of occurences of each circRNA in control 3

D1

  Number of occurences of each circRNA in DCM 1

D2

  Number of occurences of each circRNA in DCM 2

D3

  Number of occurences of each circRNA in DCM 3

H1

  Number of occurences of each circRNA in HCM 1

H2

  Number of occurences of each circRNA in HCM 2

H3

  Number of occurences of each circRNA in HCM 3

### Examples

    data(backSplicedJunctions)

[Package circRNAprofiler version 1.8.0 Index]