collapse_to_cluster {clustifyr} | R Documentation

## From per-cell calls, take highest freq call in each cluster

### Description

From per-cell calls, take highest freq call in each cluster

### Usage

    collapse_to_cluster(res, metadata, cluster_col, threshold = 0)

### Arguments

`res` | dataframe of idents, such as output of cor_to_call
`metadata` | input metadata with tsne or umap coordinates and cluster ids
`cluster_col` | metadata column for cluster
`threshold` | minimum correlation coefficent cutoff for calling clusters

### Value

new metadata with added columns

### Examples

    res <- clustify(
        input = pbmc_matrix_small,
        metadata = pbmc_meta,
        cluster_col = "classified",
        ref_mat = cbmc_ref,
        per_cell = TRUE
    )

    res2 <- cor_to_call(res)

    collapse_to_cluster(
        res2,
        metadata = pbmc_meta,
        cluster_col = "classified",
        threshold = 0
    )

[Package clustifyr version 1.6.0 Index]