gmt_to_list {clustifyr} | R Documentation

## convert gmt format of pathways to list of vectors

### Description

convert gmt format of pathways to list of vectors

### Usage

    gmt_to_list(
      path,
      cutoff = 0,
      sep = "\thttp://www.broadinstitute.org/gsea/msigdb/cards/.*?\t"
    )

### Arguments

`path` | gmt file path
`cutoff` | remove pathways with less genes than this cutoff
`sep` | sep used in file to split path and genes

### Value

list of genes in each pathway

### Examples

    gmt_file <- system.file(
        "extdata",
        "c2.cp.reactome.v6.2.symbols.gmt.gz",
        package = "clustifyr"
    )

    gl <- gmt_to_list(path = gmt_file)
    length(gl)

[Package clustifyr version 1.6.0 Index]