object_data {clustifyr} | R Documentation

## Function to access object data

### Description

Function to access object data

### Usage

    object_data(object, ...)

    ## S3 method for class 'Seurat'
    object_data(object, slot, n_genes = 1000, ...)

    ## S3 method for class 'SingleCellExperiment'
    object_data(object, slot, ...)

### Arguments

`object` | object after tsne or umap projections and clustering
`...` | additional arguments
`slot` | data to access
`n_genes` | number of genes limit for Seurat variable genes, by default 1000, set to 0 to use all variable genes (generally not recommended)

### Value

expression matrix, with genes as row names, and cell types as column names

### Examples

    mat <- object_data(
        object = s_small3,
        slot = "data"
    )
    mat[1:3, 1:3]
    mat <- object_data(
        object = sce_small,
        slot = "data"
    )
    mat[1:3, 1:3]

[Package clustifyr version 1.6.0 Index]