callSummarize {cn.farms} | R Documentation

## Defines which variables should be written back when calling a cn.farms run

### Description

Defines which variables should be written back when calling a cn.farms run

### Usage

    callSummarize(object, psInfo, summaryMethod, summaryParam, batchList = NULL,
      cores = 1, runtype = "ff", returnValues, saveFile = "summData")

### Arguments

`object` | an matrix with normalized intensity values.
`psInfo` | a data frame stating the physical position.
`summaryMethod` | the summarization method.
`summaryParam` | a list with the parameters of the summarization method.
`batchList` | batchList
`cores` | cores
`runtype` | mode how the results are saved. Possible values are ff or bm. If ff is chosen the data will not be saved automatically. With bm the results will be saved permanently.
`returnValues` | list with return values. For possible values see summaryMethod.
`saveFile` | name of the file to save.

### Value

Results of FARMS run with specified parameters - exact FARMS version

### Author(s)

Djork-Arne Clevert okko@clevert.de and Andreas Mitterecker mitterecker@bioinf.jku.at

[Package cn.farms version 1.42.0 Index]