extractData {combi} | R Documentation

## Helper function to extract data matrix from phyloseq, expressionset objects etc. Also filers out all zero rows

### Description

Helper function to extract data matrix from phyloseq, expressionset objects etc. Also filers out all zero rows

### Usage

    extractData(data, logTransformGaussian = TRUE)

### Arguments

`data` | The list of data objects, either matrix, phyloseq or ExpressionSet objects
`logTransformGaussian` | A boolean, should array data be logtransformed

### Value

the raw data matrices, samples in the rows

### Examples

    data(Zhang)
    matrixList = extractData(list("microbiome" = zhangMicrobio,
    "metabolome" = zhangMetabo))

[Package combi version 1.6.0 Index]