addClustering	addClustering-scRNAseq
addClustering,scRNAseq-method	addClustering-scRNAseq
calculateClustersSimilarity	calculateClustersSimilarity-scRNAseq
calculateClustersSimilarity,scRNAseq-method	calculateClustersSimilarity-scRNAseq
clusterCellsInternal	clusterCellsInternal-scRNAseq
clusterCellsInternal,scRNAseq-method	clusterCellsInternal-scRNAseq
conclusCacheClear	conclusCacheClear
constructors	constructors
Dbscan	Dbscan-class
Dbscan-class	Dbscan-class
DbscanCluster	constructors
exportResults	exportResults-scRNAseq
exportResults,scRNAseq-method	exportResults-scRNAseq
generateTSNECoordinates	generateTSNECoordinates-scRNAseq
generateTSNECoordinates,scRNAseq-method	generateTSNECoordinates-scRNAseq
getCellsSimilarityMatrix	getters
getCellsSimilarityMatrix,scRNAseq-method	getters
getClustering	getters
getClustering,Dbscan-method	getters
getClustersSimilarityMatrix	getters
getClustersSimilarityMatrix,scRNAseq-method	getters
getClustersSimilarityOrdered	getters
getClustersSimilarityOrdered,scRNAseq-method	getters
getCoordinates	getters
getCoordinates,Tsne-method	getters
getCountMatrix	getters
getCountMatrix,scRNAseq-method	getters
getDbscanList	getters
getDbscanList,scRNAseq-method	getters
getEpsilon	getters
getEpsilon,Dbscan-method	getters
getExperimentName	getters
getExperimentName,scRNAseq-method	getters
getGenesInfos	getters
getGenesInfos,scRNAseq-method	getters
getMarkerGenesList	getters
getMarkerGenesList,scRNAseq-method	getters
getMinPoints	getters
getMinPoints,Dbscan-method	getters
getName	getters
getName,Dbscan-method	getters
getName,Tsne-method	getters
getOutputDirectory	getters
getOutputDirectory,scRNAseq-method	getters
getPC	getters
getPC,Tsne-method	getters
getPerplexity	getters
getPerplexity,Tsne-method	getters
getSceNorm	getters
getSceNorm,scRNAseq-method	getters
getSpecies	getters
getSpecies,scRNAseq-method	getters
getSuggestedClustersNumber	getters
getSuggestedClustersNumber,scRNAseq-method	getters
getters	getters
getTopMarkers	getters
getTopMarkers,scRNAseq-method	getters
getTSNEList	getters
getTSNEList,scRNAseq-method	getters
loadDataOrMatrix	loadDataOrMatrix
normaliseCountMatrix	normaliseCountMatrix-scRNAseq
normaliseCountMatrix,scRNAseq-method	normaliseCountMatrix-scRNAseq
plotCellHeatmap	plotCellHeatmap
plotCellHeatmap,scRNAseq-method	plotCellHeatmap
plotCellSimilarity	plotCellSimilarity-scRNAseq
plotCellSimilarity,scRNAseq-method	plotCellSimilarity-scRNAseq
plotClusteredTSNE	plotClusteredTSNE-scRNAseq
plotClusteredTSNE,scRNAseq-method	plotClusteredTSNE-scRNAseq
plotClustersSimilarity	plotClustersSimilarity
plotClustersSimilarity,scRNAseq-method	plotClustersSimilarity
plotGeneExpression	plotGeneExpression-scRNAseq
plotGeneExpression,scRNAseq-method	plotGeneExpression-scRNAseq
rankGenes	rankGenes-scRNAseq
rankGenes,scRNAseq-method	rankGenes-scRNAseq
retrieveFromGEO	retrieveFromGEO
retrieveGenesInfo	retrieveGenesInfo-scRNAseq
retrieveGenesInfo,scRNAseq-method	retrieveGenesInfo-scRNAseq
retrieveTableClustersCells	retrieveTableClustersCells-scRNAseq
retrieveTableClustersCells,scRNAseq-method	retrieveTableClustersCells-scRNAseq
retrieveTopClustersMarkers	retrieveTopClustersMarkers-scRNAseq
retrieveTopClustersMarkers,scRNAseq-method	retrieveTopClustersMarkers-scRNAseq
runCONCLUS	runCONCLUS
runDBSCAN	runDBSCAN-scRNAseq
runDBSCAN,scRNAseq-method	runDBSCAN-scRNAseq
scRNAseq	scRNAseq-class
scRNAseq-class	scRNAseq-class
setCellsSimilarityMatrix	setters
setCellsSimilarityMatrix<-	setters
setCellsSimilarityMatrix<-,scRNAseq-method	setters
setClustering	setters
setClustering<-	setters
setClustering<-,Dbscan-method	setters
setClustersSimilarityMatrix	setters
setClustersSimilarityMatrix<-	setters
setClustersSimilarityMatrix<-,scRNAseq-method	setters
setClustersSimiliratyOrdered	setters
setClustersSimiliratyOrdered<-	setters
setClustersSimiliratyOrdered<-,scRNAseq-method	setters
setCoordinates	setters
setCoordinates<-	setters
setCoordinates<-,Tsne-method	setters
setCountMatrix	setters
setCountMatrix<-	setters
setCountMatrix<-,scRNAseq-method	setters
setDbscanList	setters
setDbscanList<-	setters
setDbscanList<-,scRNAseq-method	setters
setEpsilon	setters
setEpsilon<-	setters
setEpsilon<-,Dbscan-method	setters
setExperimentName	setters
setExperimentName<-	setters
setExperimentName<-,scRNAseq-method	setters
setGenesInfos	setters
setGenesInfos<-	setters
setGenesInfos<-,scRNAseq-method	setters
setMarkerGenesList	setters
setMarkerGenesList<-	setters
setMarkerGenesList<-,scRNAseq-method	setters
setMinPoints	setters
setMinPoints<-	setters
setMinPoints<-,Dbscan-method	setters
setName<-	setters
setName<-,Dbscan-method	setters
setName<-,Tsne-method	setters
setOutputDirectory	setters
setOutputDirectory<-	setters
setOutputDirectory<-,scRNAseq-method	setters
setPC	setters
setPC<-	setters
setPC<-,Tsne-method	setters
setPerplexity	setters
setPerplexity<-	setters
setPerplexity<-,Tsne-method	setters
setSceNorm	setters
setSceNorm<-	setters
setSceNorm<-,scRNAseq-method	setters
setSpecies	setters
setSpecies<-	setters
setSpecies<-,scRNAseq-method	setters
setSuggestedClustersNumber	setters
setSuggestedClustersNumber<-	setters
setSuggestedClustersNumber<-,scRNAseq-method	setters
setters	setters
setTopMarkers	setters
setTopMarkers<-	setters
setTopMarkers<-,scRNAseq-method	setters
setTSNEList	setters
setTSNEList<-	setters
setTSNEList<-,scRNAseq-method	setters
singlecellRNAseq	constructors
testClustering	testClustering-scRNAseq
testClustering,scRNAseq-method	testClustering-scRNAseq
Tsne	Tsne-class
Tsne-class	Tsne-class
TsneCluster	constructors
