toy_dataset {condiments} | R Documentation

## A toy dataset used in the vignette and in the examples

### Description

This example has been created using the 'create_differential_topology' function.

### Usage

    data(toy_dataset)

### Format

A list with two dataframes

- *sd* A dataframe containing, for 1000 cells, the dimensions in two coordinates, and cluster, lineage and condition assignment.

- `mst`: a data.frame that contains the skeleton of the trajectories

### Source

The following code reproduces the object `set.seed(21) library(condiments) data <- create_differential_topology(n_cells = 1000, shift = 0) data$sd$Dim2 <- data$sd$Dim2 * 5 data$mst$Dim2 <- data$mst$Dim2 * 5 data$sd$cl <- kmeans(as.matrix(data$sd[, 1:2]), 8)$cluster data$sd$cl <- as.character(data$sd$cl)`

[Package condiments version 1.2.0 Index]