orderContigsTSP {contiBAIT} | R Documentation

## Attempt to order contigs within linkage groups using travelling salesperson algorithm

### Description

Attempt to order contigs within linkage groups using travelling salesperson algorithm

### Usage

    orderContigsTSP(linkageGroupReadTable, reps)

### Arguments

`linkageGroupReadTable` | dataframe of strand calls (product of combineZeroDists or preprocessStrandTable)
`reps` | Number of repetitions for he 2-opt TSP solver algorithm

### Value

list of two members: 1) contig names in order, 2) the original data.frame entered into function correctly ordered

[Package contiBAIT version 1.22.0 Index]