fietz {coseq} | R Documentation

## RNA-seq data from the mouse neocortex in Fietz et al. (2012)

### Description

This dataset represents RNA-seq data from mouse neocortex RNA-seq data in five embryonic (day 14.5) mice by analyzing the transcriptome of three regions: the ventricular zone (VZ), subventricular zone (SVZ) and cortical place (CP).

### Usage

    data(fietz)

### Format

An ExpressionSet named `fietz.eset` containing the phenotype data and expression data for the Fietz et al. (2012) experiment. Phenotype data may be accessed using the `pData` function, and expression data may be accessed using the `exprs` function.

### Value

Object of class ‘ExpressionSet’. Matrix of counts can be accessed after loading the ‘Biobase’ package and calling `exprs(fietz))`.

### Source

Digital Expression Explorer (http://dee.bakeridi.edu.au/).

### References

https://perso.math.univ-toulouse.fr/maugis/mixstatseq/packages

Fietz, S. A., et al. (2012). Transcriptomes of germinal zones of human and mouse fetal neocortex suggest a role of extracellular matrix in progenitor self-renewal. Proceedings of the National Academy of Sciences, 109(29):11836-11841.

[Package coseq version 1.18.0 Index]