ch2_subset {crossmeta} | R Documentation

## Subset for Paired Two-Channel ExpressionSet

### Description

Two-channel esets use intraspotCorrelation and lmscFit so can't use duplicateCorrelation. If not using one channel in contrasts (e.g. because all reference RNA) and have paired design, better to treat as single channel so that can use duplicateCorrelation.

### Usage

    ch2_subset(eset, prev_anal)

### Arguments

`eset` | Annotated ExpressionSet. Created by `load_raw`.
`prev_anal` | One item (for eset) from previous result of `diff_expr`.

### Value

ExpressionSet. If two-channel, paired and one channel not used will subset to used channel.

[Package crossmeta version 1.20.0 Index]