add_vsd {crossmeta} | R Documentation

## Add VST normalized assay data element to expression set

### Description

For microarray datasets duplicates exprs slot into vsd slot.

### Usage

    add_vsd(eset, rna_seq = TRUE)

### Arguments

`eset` | ExpressionSet with group column in `pData(eset)`
`rna_seq` | Is this an RNA-seq `eset`? Default is `TRUE`.
`pbulk` | Is this an pseudobulk single-cell `eset`? Default is `FALSE`. Used by package dseqr.
`vsd_path` | Path to save result to. Allows skipping running transform on each load.

### Value

`eset` with `'vsd'` `assayDataElement` added.

[Package crossmeta version 1.20.0 Index]