load_plat {crossmeta} | R Documentation

## Load and pre-process raw Affymetrix, Illumina, and Agilent microarrays.

### Description

Load raw files previously downloaded with `get_raw`. Used by `load_raw`.

### Usage

    load_plat(gse_name, data_dir, gpl_dir, ensql)

### Arguments

`gse_name` | GSE names.
`data_dir` | String specifying directory with GSE folder.
`gpl_dir` | String specifying parent directory to search for previously downloaded GPL.soft files.
`ensql` | For development. Path to sqlite file with ENTREZID and SYMBOL columns created in data-raw/entrezdt.

### Details

Data is normalized, SYMBOL and PROBE annotation are added to fData slot.

### Value

List of annotated esets, one for each platform in `gse_name`.

### See Also

`get_raw` to obtain raw data.

[Package crossmeta version 1.20.0 Index]