run_lmfit {crossmeta} | R Documentation

## Perform lmFit analysis from limma.

### Description

If paired samples, runs `duplicateCorrelation` to estimate intra-patient variance.

### Usage

    run_lmfit(eset, mod, rna_seq = TRUE)

### Arguments

`eset` | Annotated eset created by `load_raw`. Non-selected samples and duplicate features removed by `add_contrasts` and `iqr_replicates`.
`mod` | Model matrix generated by `diff_setup`. With or without surrogate variables.
`rna_seq` | Is this an RNA-seq `eset`? Default is `TRUE`.

### Value

result from call to limma `lmFit`.

[Package crossmeta version 1.20.0 Index]