makeTSCAN {ctgGEM} | R Documentation

## A Cell Tree Generating Function using TSCAN

### Description

This function, called by `generate_tree`, creates a cell tree using the data and the TSCAN package. This function utilizes code from the TSCAN vignette R script.

### Usage

    makeTSCAN(dataSet, outputDir = tempdir())

### Arguments

`dataSet` | a ctgGEMset object
`outputDir` | the directory where output should be saved, defaults to the temporary location returned by `tempdir()`

### Value

an updated ctgGEMset object

[Package ctgGEM version 1.6.0 Index]