# Differential expression using kernel-based score test

## Documentation for package ‘cytoKernel’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

cytoHDBMW | Example of processed dimensionally reduced flow cytometry (marker median intensities) Bodenmiller_BCR_XL_flowSet() expression dataset from HDCytoData Bioconductor data package.
CytoK | CytoK
CytoK-class | the CytoK class
CytoKalpha | Generic function that returns the CytoK level of significance (alpha) Given a CytoK object, this function returns the CytoK alpha
CytoKalpha-method | Generic function that returns the CytoK level of significance (alpha) Given a CytoK object, this function returns the CytoK alpha
CytoKData | Generic function that returns the CytoK Data
CytoKData-method | Generic function that returns the CytoK Data
CytoKDEData | Differentially expressed data by cytoKernel
CytoKDEfeatures | Generic function that returns the CytoK Differentially Expressed (DE) features Given a CytoK object, this function returns the CytoK DE features
CytoKDEfeatures-method | Generic function that returns the CytoK Differentially Expressed (DE) features Given a CytoK object, this function returns the CytoK DE features
CytoKFeatures | Generic function that returns the CytoK features
CytoKFeatures-method | Generic function that returns the CytoK features
CytoKFeaturesOrdered | Generic function that returns the ordered CytoK features
CytoKFeaturesOrdered-method | Generic function that returns the ordered CytoK features
CytoKFeatureVars | Generic function that returns the CytoK Feature Vars
CytoKFeatureVars-method | Generic function that returns the CytoK Feature Vars
CytoKProc | CytoKProc
data.frameORSummarizedExperiment-class | S4 Class union
plotCytoK | Heatmap of the differentially expressed data with features on the rows and samples (group factors) as the columns from 'CytoK' and 'CytoKDEData' function.
vectorORNull-class | S4 Class union