runDE {debrowser} | R Documentation

## runDE

### Description

Run DE algorithms on the selected parameters. Output is to be used for the interactive display.

### Usage

    runDE(
      data = NULL,
      metadata = NULL,
      columns = NULL,
      conds = NULL,
      params = NULL
    )

### Arguments

`data,` | A matrix that includes all the expression raw counts, rownames has to be the gene, isoform or region names/IDs
`metadata,` | metadata of the matrix of expression raw counts
`columns,` | is a vector that includes the columns that are going to be analyzed. These columns has to match with the given data.
`conds,` | experimental conditions. The order has to match with the column order
`params,` | all params for the DE methods

### Value

de results

### Examples

        x <- runDE()

[Package debrowser version 1.22.5 Index]