filt_minsize {decoupleR} | R Documentation

## Filter sources with minsize targets

### Description

Filter sources of a net with less than minsize targets

### Usage

    filt_minsize(mat_f_names, network, minsize = 5)

### Arguments

`mat_f_names` | Feature names of mat.
`network` | Tibble or dataframe with edges and it's associated metadata.
`minsize` | Integer indicating the minimum number of targets per source.

### Value

Filtered network.

### Examples

    inputs_dir <- system.file("testdata", "inputs", package = "decoupleR")
    mat <- readRDS(file.path(inputs_dir, "input-expr_matrix.rds"))
    network <- readRDS(file.path(inputs_dir, "input-dorothea_genesets.rds"))
    network <- rename_net(network, tf, target, mor, likelihood)
    filt_minsize(rownames(mat), network, minsize = 5)

[Package decoupleR version 2.0.1 Index]