derfinder-package {derfinder} | R Documentation

## derfinder: Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via the DER Finder approach

### Description

This package provides functions for annotation-agnostic differential expression analysis of RNA-seq data. Two implementations of the DER Finder approach are included in this package: (1) single base-level F-statistics and (2) DER identification at the expressed regions-level. The DER Finder approach can also be used to identify differentially bounded ChIP-seq peaks.

### Author(s)

Maintainer: Leonardo Collado-Torres lcolladotor@gmail.com (ORCID)

Authors:

- Andrew E. Jaffe andrew.jaffe@libd.org (ORCID)

- Jeffrey T. Leek jtleek@gmail.com (ORCID) [thesis advisor]

Other contributors:

- Alyssa C. Frazee alyssa.frazee@gmail.com [contributor]

### See Also

Useful links:

- https://github.com/lcolladotor/derfinder

- Report bugs at https://support.bioconductor.org/t/derfinder/

[Package derfinder version 1.28.0 Index]