getGenes {dittoSeq} | R Documentation

## Returns the names of all genes of a target object.

### Description

Returns the names of all genes of a target object.

### Usage

    getGenes(object, assay = .default_assay(object), swap.rownames = NULL)

### Arguments

`object` | A Seurat, SingleCellExperiment, or SummarizedExperiment object.
`assay` | Single string or integer that sets which set of seq data inside the object to check.
`swap.rownames` | String. For SummarizeedExperiment or SingleCellExperiment objects, the column name of rowData(object) to be used to identify features instead of rownames(object).

### Value

A string vector, returns the names of all genes of the `object` for the requested `assay`.

### Author(s)

Daniel Bunis

### See Also

`isGene` for returning all genes in an `object`

`gene` for obtaining the expression data of genes

### Examples

    example(importDittoBulk, echo = FALSE)
    getGenes(object = myRNA, assay = "counts")

    # To see all genes of an object for the default assay that dittoSeq would use
    # leave out the assay input
    getGenes(myRNA)

    # Seurat
    # pbmc <- Seurat::pbmc_small
    # # To see all genes of an object of a particular assay
    # getGenes(pbmc, assay = "RNA")

[Package dittoSeq version 1.6.0 Index]