generateStats {doseR} | R Documentation

## generateStats Statistics function to summarize expression data of an s.e. object.

### Description

generateStats is a summary function used on various expression data.

### Usage

    generateStats(se, groupings= NULL, mode_mean=TRUE, LOG2=TRUE)

### Arguments

`se` | A SummarizedExperiment object.
`groupings` | A grouping (annotation column), e.g. groupings="something".
`mode_mean` | Boolean, Calculate RowMeans or RowMedians.
`LOG2` | Boolean, Calculate LOG2.

### Details

This function completes summary statistics of the expression of the supplied s.e. object.

### Value

Returns an invisible list of summary statistics, kruskal test and raw data of an s.e. object.

### Author(s)

AJ Vaestermark, JR Walters.

### References

The "doseR" package, 2018 (in press).

### Examples

    data(hmel.se)
    generateStats(se, groupings="annotation.ZA")

[Package doseR version 1.10.0 Index]