se.DM {doseR} | R Documentation

## se.DM Function to convert SummarizedExperiment object to LME4 input.

### Description

This function generates LME4 input.

### Usage

    se.DM(se, weightByLL = TRUE)

### Arguments

`se` | A SummarizedExperiment object containing FPKM values and at least one annotation column.
`weightByLL` | Logical, weigh by log likelihood score.

### Details

This function converts SummarizedExperiment object.

### Value

Returns LME4 input.

### Author(s)

AJ Vaestermark, JR Walters.

### References

The "doseR" package, 2018 (in press).

### Examples

    data(hmel.se)
    f_se <- quantFilter(se, lo.bound = 0.4, hi.bound = 0.5)
    dm <- se.DM(f_se)

[Package doseR version 1.10.0 Index]