exportPlot {dpeak} | R Documentation

## Export plots to pdf files.

### Description

Exports the plots of estimated binding sites (`plotType="fit"`) or the goodness of fit (GOF) plots (`plotType="GOF"`) to a PDF file.

### Usage

    exportPlot(x, y, ...)

### Arguments

`x` | Object of class `DpeakFit`

,

`y` | Name of file to export to.
`...` | Other parameters to be passed through to generic `exportPlot`.

### Details

Exports the plots of estimated binding sites (`plotType="fit"`) or the goodness of fit (GOF) plots (`plotType="GOF"`) to a PDF file. Its file name needs to be specified in the `filename` argument. In both of these plots, estimated binding sites or simulated fragments are superimposed on the plots of reads (or fragments) aligned to each position. For SET data, if `plotType="fit"` and `strand=TRUE`, reads will be plotted in a strand-specific manner, where each read is extended to `extension` from its 5' end. If `smoothing=TRUE`, a smoothed plot (using the smoothing spline) is provided. Unsmoothed plot is provided by default.

### Value

Export plots to files

### Author(s)

Dongjun Chung

### Examples

    data(exampleData)
    exampleFit <- dpeakFit( exampleData, maxComp=5)
    exportPlot( exampleFit, filename="exampleResult_combined.pdf" )

[Package dpeak version 1.6.0 Index]