listk {famat} | R Documentation

## Pathway enrichment analysis results for KEGG pathways.

### Description

Results of pathways enrichment analysis on the list of genes and metabolites, using KEGG pathways. Pathways enrichment analysis is performed using MPINet for metabolites and gprofiler2 for genes.

### Usage

    data("listk")

### Format

A list of 4 items.

resmeta

  Pathway enrichment analysis results for metabolites. A data frame with 7 rows and 2 variables.

  name

    Name of pathways resulting in metabolites pathway enrichment analysis.

  id

    Identifiers of pathways resulting in metabolites pathway enrichment analysis.

resgene

  Pathway enrichment analysis results for genes. A data frame with 11 rows and 2 variables.

  name

    Name of pathways resulting in genes pathway enrichment analysis.

  id

    Identifiers of pathways resulting in genes pathway enrichment analysis.

gened

  Vector containing user's genes (ACAA1, SLC6A12)

metad

  Vector containing user's metabolites (C00002, C00719)

### Source

`path_enrich` function.

### References

Yanjun Xu, Chunquan Li and Xia Li (2013). MPINet: The package can implement the network-based metabolite pathway identification of pathways.. R package version 1.0. https://CRAN.R-project.org/package=MPINet

Liis Kolberg and Uku Raudvere (2020). gprofiler2: Interface to the 'g:Profiler' Toolset. R package version 0.2.0. https://CRAN.R-project.org/package=gprofiler2

[Package famat version 1.4.0 Index]