plot_ora {fcoex} | R Documentation

## ORA visualization

### Description

Creates a bar plot with the results of module Over Representation Analysis (ORA)

### Usage

    plot_ora(fc, n = 10, pv_cut = 0.05, ...)

    ## S4 method for signature 'fcoex'
    plot_ora(fc, n = 10, pv_cut = 0.05, ...)

### Arguments

`fc` | Object of class `fcoex`.
`n` | number of enrichments to show
`pv_cut` | p-value significance cutoff. Default is 0.05.
`...` | parameters to plot_ora_single

### Details

This function was copied and adapted from the CEMiTool package. The visualization in this function is derivative of the intelectual work of CEMiTool's authors.

### Value

Object of class `fcoex` with ORA plots

### Examples

    data("fc")
    gmt_fname <- system.file("extdata", "pathways.gmt", package = "CEMiTool")
    gmt_in <- pathwayPCA::read_gmt(gmt_fname)
    fc <- mod_ora(fc, gmt_in)
    fc <- plot_ora(fc)

[Package fcoex version 1.8.0 Index]