Package: fcoex
Title: FCBF-based Co-Expression Networks for Single Cells
Version: 1.8.0
Authors@R: c(person("Tiago", "Lubiana", email = "tiago.lubiana.alves@usp.br",
  role = c("aut", "cre")), person("Helder", "Nakaya", email = "hnkaya@usp.br",
  role = c("aut","ths")))
Description: The fcoex package implements an easy-to use interface to co-expression analysis based on the FCBF (Fast Correlation-Based Filter) algorithm. it was implemented especifically to deal with single-cell data. The modules found can be used to redefine cell populations, unrevel novel gene associations and predict gene function by guilt-by-association. The package structure is adapted from the CEMiTool package, relying on visualizations and code designed and written by CEMiTool's authors.
Depends: R (>= 4.1)
Imports: FCBF, parallel, progress, dplyr, ggplot2, ggrepel, igraph,
        grid, intergraph, stringr, clusterProfiler, data.table,
        grDevices, methods, network, scales, sna, utils, stats,
        SingleCellExperiment, pathwayPCA, Matrix
Suggests: testthat (>= 2.1.0), devtools, BiocManager, TENxPBMCData,
        scater, schex, gridExtra, scran, Seurat, knitr, rmarkdown
License: GPL-3
Encoding: UTF-8
biocViews: GeneExpression, Transcriptomics, GraphAndNetwork,
        mRNAMicroarray, RNASeq, Network, NetworkEnrichment, Pathways,
        ImmunoOncology, SingleCell
LazyData: true
RoxygenNote: 7.1.2
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/fcoex
git_branch: RELEASE_3_14
git_last_commit: 6ba7fe5
git_last_commit_date: 2021-10-26
Date/Publication: 2021-10-26
NeedsCompilation: no
Packaged: 2021-10-27 01:26:01 UTC; biocbuild
Author: Tiago Lubiana [aut, cre],
  Helder Nakaya [aut, ths]
Maintainer: Tiago Lubiana <tiago.lubiana.alves@usp.br>
Built: R 4.1.1; ; 2021-10-27 10:55:37 UTC; windows
