gmtPathways {fgsea} | R Documentation

## Returns a list of pathways from a GMT file.

### Description

Returns a list of pathways from a GMT file.

### Usage

    gmtPathways(gmt.file)

### Arguments

`gmt.file` | Path to a GMT file.

### Value

A list of vectors with gene sets.

### Examples

    pathways <- gmtPathways(system.file(
         "extdata", "mouse.reactome.gmt", package="fgsea"))

[Package fgsea version 1.20.0 Index]