fg_data_fca {flowGraph} | R Documentation

## fg_data_fca

### Description

fg_data_fca

### Usage

    fg_data_fca

### Format

A list containing the following elements derived from the flowCAP-II AML data set for cell populations up to layer 3.

- `count`: A numeric sample x cell population node matrix with cell count values.

- `meta`: A data frame containing meta information on samples in `count`; it contains columns:

  - `class`: a string indicating whether a sample is from a "control" or "aml" subject.

  - `id`: a string containing sample id's.

  - `train`: a logical variable indicating whether a sample is from the train or test set.

  - `subject`: a numeric variable containing the id of the subject from whom the sample came from.

  - `tube`: the tube or panel number; all samples in this data set is analyzed under the 6th panel.

### Source

Aghaeepour N, Finak G, Hoos H, Mosmann TR, Brinkman R, Gottardo R, Scheuermann RH, Consortium F, Consortium DREAM, others (2013). “Critical assessment of automated flow cytometry data analysis techniques.” Nature methods, 10(3), 228–238.

[Package flowGraph version 1.2.0 Index]