summarizeFlow {flowTime} | R Documentation

## Generate summary statistics for a flowSet

### Description

Gates a sample to all yeast, then singlet, then doublets. Also calculates singlet to doublet ratio. Returns a list of data frames, e.g. output$singlets, output$doublets, etc.

### Usage

    summarizeFlow(
      flowset,
      channel = NA,
      gated = FALSE,
      ploidy = FALSE,
      only = FALSE
    )

### Arguments

`flowset` | the `flowSet` to be summarized
`channel` | `character vector` which data channel(s) should be summarized? If excluded (or `NA`) all channels will be summarized (default)
`gated` | `boolean` is the data already appropriately gated?
`ploidy` | `character` does the flowSet contain haploid or diploid cells?
`only` | `character` summarize only "singlet", "doublet", or all "yeast" cells, FALSE will return all

### Value

`data frame` containing the specified summary statistics of the specified cell populations for each frame

### Examples

    plate1 <- read.flowSet(path = system.file("extdata", "ss_example",
    package = "flowTime"), alter.names = TRUE)
    summarizeFlow(plate1, channel = "FL1.A", gated = TRUE,
    ploidy = "diploid", only = "yeast")

[Package flowTime version 1.18.0 Index]