annotateFlowSet {flowTime} | R Documentation

## Annotate a flowSet with experimental metadata

### Description

Add annotations to a flowSets phenoData and plate numbers, strain names, and treatment also set T0

### Usage

    annotateFlowSet(yourFlowSet, annotation_df, mergeBy = "name")

### Arguments

`yourFlowSet` | a flowSet with sampleNames of the format 'plate#_Well', we typically use the following code chunk to read data from individual plates as exported from BD Accuri C6 software.
`annotation_df` | A data frame with columns 'well', 'strain', 'treatment', containing all of the wells in the flowset labeled with the strain and treatment in that well.
`mergeBy` | the unique identifier column

### Value

An annotated flowSet

### Examples

    dat <- read.flowSet(path = system.file("extdata", "ss_example",
    package = "flowTime"), alter.names = TRUE)
    annotation <- read.csv(system.file("extdata", "ss_example.csv", package =
    "flowTime"))
    annotateFlowSet(dat, annotation, mergeBy = "name")

[Package flowTime version 1.18.0 Index]