ct.rankSimple {gCrisprTools} | R Documentation

## Rank Signals in a Simplified Pooled Screen Result Object

### Description

This function takes in a supplied results data.frame, optionally transforms it into a 'simplifiedResult', and returns the ranks of the target-level signals.

### Usage

    ct.rankSimple(df, top = c("enrich", "deplete"))

### Arguments

`df` | A results data.frame, in either raw or simplified form. Will be converted to simplified form if necessary.
`top` | Determines the directionality of the ranking. 'enrich' defines ranks from the most enriched to the most depleted target; 'deplete' does the opposite

### Value

A numeric vector of ranks, with length equal to the number of rows in the simplified data.frame.

### Author(s)

Russell Bainer

### Examples

    data('resultsDF')
    df.simple <- ct.simpleResult(resultsDF)
    sr <- ct.rankSimple(resultsDF)
    all((df.simple$best.p[sr == 1] == 0), (df.simple$direction[sr == 1] == 'enrich'))

    sr <- ct.rankSimple(resultsDF, 'deplete')
    all((df.simple$best.p[sr == 1] == 0), (df.simple$direction[sr == 1] == 'deplete'))

[Package gCrisprTools version 2.0.0 Index]