OGP-class {geneplast} | R Documentation

## Class `"OGP"`: an S4 class for genetic plasticity analysis.

### Description

This S4 class includes methods to access the genetic plasticity of orthologous groups.

### Objects from the Class

Objects can be created by calls to the `"gplast.preprocess"` constructor.

### Slots

`sspids`:

  Object of class `"data.frame"`, a data frame with species annotation.

`cogids`:

  Object of class `"data.frame"`, a data frame with COG's data.

`orthodist`:

  Object of class `"matrix"`, a matrix with COG's information (see return values in the OGP methods).

`abundance`:

  Object of class `"numeric"`, a numeric vector with results from the `gplast` function (see return values in the OGP methods).

`diversity`:

  Object of class `"numeric"`, a numeric vector with results from the `gplast` function (see return values in the OGP methods).

`plasticity`:

  Object of class `"numeric"`, a numeric vector with results from the `gplast` function (see return values in the OGP methods).

`status`:

  Object of class `"character"`, a character value specifying the status of the OGP object based on the available methods.

### Methods

gplast

  `signature(object = "OGP")`: see `gplast`

gplast.get

  `signature(object = "OGP")`: see `gplast.get`

### Author(s)

Rodrigo Dalmolin, Mauro Castro

### See Also

`gplast.preprocess`

[Package geneplast version 1.20.1 Index]