chiapet {idr2d} | R Documentation

## Example Genomic Interaction Data Set

### Description

This object contains genomic interactions on chromosomes 1 to 5, which could be the results of Hi-C or ChIA-PET experiments, done in duplicates.

### Usage

    chiapet

### Format

A list with two components, the data frames `rep1_df` and `rep2_df`, which have the following seven columns:

column 1: | `chr_a` | character; genomic location of anchor A - chromosome (e.g., `"chr3"`)
column 2: | `start_a` | integer; genomic location of anchor A - start coordinate
column 3: | `end_a` | integer; genomic location of anchor A - end coordinate
column 4: | `chr_b` | character; genomic location of anchor B - chromosome (e.g., `"chr3"`)
column 5: | `start_b` | integer; genomic location of anchor B - start coordinate
column 6: | `end_b` | integer; genomic location of anchor B - end coordinate
column 7: | `fdr` | numeric; False Discovery Rate - significance of interaction

[Package idr2d version 1.8.1 Index]