RemoteAlignmentTrack-class {igvR} | R Documentation

## Constructor for RemoteAlignmentTrack

### Description

`RemoteAlignmentTrack` creates an `IGV` track for remote bam files

### Usage

    RemoteAlignmentTrack(
      trackName,
      bamUrl,
      bamIndex = NULL,
      trackHeight = 50,
      visibilityWindow = 30000,
      color = "gray"
    )

### Arguments

`trackName` | A character string, used as track label by igv, we recommend unique names per track.
`bamUrl` | The URL of a bam file
`bamIndex` | The URL of a bam index file. Defaults to <bamUrl>.bai
`trackHeight` | track height, typically in range 20 (for annotations) and up to 1000 (for large sample vcf files)
`visibilityWindow` | Maximum window size in base pairs for which indexed annotations or variants are displayed. Defaults: 1 MB for variants, whole chromosome for other track types.
`color` | A character string, either a reconized color ("red") or a hex string ("#FF8532")

### Details

Detailed description goes here

### Value

A RemoteAlignmentTrack object

[Package igvR version 1.14.0 Index]