MAF-class {maftools} | R Documentation

## Class MAF

### Description

S4 class for storing summarized MAF.

### Slots

`data`

  data.table of MAF file containing all non-synonymous variants.

`variants.per.sample`

  table containing variants per sample

`variant.type.summary`

  table containing variant types per sample

`variant.classification.summary`

  table containing variant classification per sample

`gene.summary`

  table containing variant classification per gene

`summary`

  table with basic MAF summary stats

`maf.silent`

  subset of main MAF containing only silent variants

`clinical.data`

  clinical data associated with each sample/Tumor_Sample_Barcode in MAF.

### See Also

`getGeneSummary` `getSampleSummary` `getFields`

[Package maftools version 2.10.05 Index]