mafSummary {maftools} | R Documentation

## Summary statistics of MAF

### Description

Summarizes genes and samples irrespective of the type of alteration. This is different from `getSampleSummary` and `getGeneSummary` which returns summaries of only non-synonymous variants.

### Usage

    mafSummary(maf)

### Arguments

`maf` | an MAF object generated by `read.maf`

### Details

This function takes MAF object as input and returns summary table.

### Value

Returns a list of summarized tables

### See Also

`getGeneSummary` `getSampleSummary`

### Examples

    laml.maf <- system.file("extdata", "tcga_laml.maf.gz", package = "maftools")
    laml <- read.maf(maf = laml.maf)
    mafSummary(maf = laml)

[Package maftools version 2.10.05 Index]