tmb {maftools} | R Documentation

## Estimate Tumor Mutation Burden

### Description

Estimates Tumor Mutation Burden in terms of per megabases

### Usage

    tmb(maf, captureSize = 50, logScale = TRUE)

### Arguments

`maf` | maf `MAF` object
`captureSize` | capture size for input MAF in MBs. Default 50MB.
`logScale` | Default TRUE. For plotting purpose only.

### Value

data.table with TMB for every sample

### Examples

    laml.maf <- system.file("extdata", "tcga_laml.maf.gz", package = "maftools")
    laml <- read.maf(maf = laml.maf)
    tmb(maf = laml)

[Package maftools version 2.10.05 Index]