plotProtein {maftools} | R Documentation

## Display protein domains

### Description

Display protein domains

### Usage

    plotProtein(
      gene,
      refSeqID = NULL,
      proteinID = NULL,
      domainAlpha = 0.9,
      showLegend = FALSE,
      bgBorderCol = "black",
      axisTextSize = c(1, 1),
      roundedRect = TRUE,
      domainBorderCol = "black",
      showDomainLabel = TRUE,
      domainLabelSize = 0.8,
      titleSize = c(1.2, 1),
      legendTxtSize = 1,
      legendNcol = 1
    )

### Arguments

`gene` | HGNC symbol for which protein structure to be drawn.
`refSeqID` | RefSeq transcript identifier for `gene` if known.
`proteinID` | RefSeq protein identifier for `gene` if known.
`domainAlpha` | Default 1
`showLegend` | Default TRUE
`bgBorderCol` | Default "black". Set to NA to remove.
`axisTextSize` | text size x and y tick labels. Default c(1,1).
`roundedRect` | Default TRUE. If 'TRUE' domains are drawn with rounded corners. Requires `berryFunctions`
`domainBorderCol` | Default "black". Set to NA to remove.
`showDomainLabel` | Default TRUE
`domainLabelSize` | text size for domain labels. Default 0.8
`titleSize` | font size for title and subtitle. Default c(1.2, 1)
`legendTxtSize` | Text size for legend. Default 0.8
`legendNcol` | Default 1

### Examples

    par(mfrow = c(2, 1))
    plotProtein(gene = "KIT")
    plotProtein(gene = "DNMT3A")

[Package maftools version 2.10.05 Index]