getCytobandSummary {maftools} | R Documentation

## extract cytoband summary from GISTIC object

### Description

extract cytoband summary from GISTIC object

### Usage

    getCytobandSummary(x)

    ## S4 method for signature 'GISTIC'
    getCytobandSummary(x)

### Arguments

`x` | An object of class GISTIC

### Value

summarizied gistic results by altered cytobands.

### Examples

    all.lesions <- system.file("extdata", "all_lesions.conf_99.txt", package = "maftools")
    amp.genes <- system.file("extdata", "amp_genes.conf_99.txt", package = "maftools")
    del.genes <- system.file("extdata", "del_genes.conf_99.txt", package = "maftools")
    scores.gistic <- system.file("extdata", "scores.gistic", package = "maftools")
    laml.gistic = readGistic(gisticAllLesionsFile = all.lesions, gisticAmpGenesFile = amp.genes, gisticDelGenesFile = del.genes, gisticScoresFile = scores.gistic)
    getCytobandSummary(laml.gistic)

[Package maftools version 2.10.05 Index]