plot_ideogram {martini} | R Documentation

## Ideogram of SConES results.

### Description

Create a circular ideogram of the a network results using the circlize package (Gu et al., 2014).

### Usage

    plot_ideogram(gwas, net, covars = data.frame(), genome = "hg19")

### Arguments

`gwas` | A SnpMatrix object with the GWAS information.
`net` | An igraph network that connects the SNPs.
`covars` | A data frame with the covariates. It must contain a column 'sample' containing the sample IDs, and an additional columns for each covariate.
`genome` | Abbreviations of the genome to use: hg19 for human (default), mm10 for mouse, etc.

### Value

A circular ideogram, including the manhattan plot, and the interactions between the selected SNPs.

### References

Gu, Z., Gu, L., Eils, R., Schlesner, M., & Brors, B. (2014). circlize Implements and enhances circular visualization in R. Bioinformatics (Oxford, England), 30(19), 2811-2. https://doi.org/10.1093/bioinformatics/btu393

[Package martini version 1.14.0 Index]