# GWAS Incorporating Networks

## Documentation for package ‘martini’ version 1.14.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

get_GI_network | Get gene-interaction network.
get_GM_network | Get gene membership network.
get_GS_network | Get genomic sequence network
gwas2bed | Converts a MAP data.frame to a BED data.frame
ldweight_edges | Include linkage disequilibrium information in the network.
maxflow | Maxflow algorithm
mincut_c | Min-cut algorithm
minigwas | Description of the minigwas dataset.
minippi | PPIs for the minigwas dataset.
minisnpMapping | Genes for the minigwas dataset.
plot_ideogram | Ideogram of SConES results.
scones | Find connected explanatory SNPs
scones.cv | Find connected explanatory SNPs.
scones.cv_ | Find connected explanatory features
scones_ | Find connected explanatory features
search_cones | Find connected explanatory SNPs.
sigmod | Find connected explanatory SNPs
sigmod.cv | Find connected explanatory SNPs.
sigmod.cv_ | Find connected explanatory features
sigmod_ | Find connected explanatory features
simulate_causal_snps | Simulate causal SNPs
simulate_phenotype | Simulate phenotype
subvert | Vertices with an attribute
wrap_Xy | Make pseudo SnpMatrix object