plotGenePSI {maser} | R Documentation

## Boxplots of Percent spliced-in levels for gene events.

### Description

Boxplots of Percent spliced-in levels for gene events.

### Usage

    plotGenePSI(events, type = c("A3SS", "A5SS", "SE", "RI", "MXE"),
      show_replicates = TRUE)

### Arguments

`events` | a maser object.
`type` | character indicating splice type. Possible values are `c("A3SS", "A5SS", "SE", "RI", "MXE")`
`show_replicates` | logical, add data points for individual replicates

### Value

a ggplot object.

### Examples

    path <- system.file("extdata", file.path("MATS_output"), package = "maser")
    hypoxia <- maser(path, c("Hypoxia 0h", "Hypoxia 24h"))
    hypoxia_filt <- filterByCoverage(hypoxia, avg_reads = 5)
    hypoxia_mib2 <- geneEvents(hypoxia_filt, geneS = "MIB2")
    plotGenePSI(hypoxia_mib2, type = "SE", show_replicates = TRUE)

[Package maser version 1.12.1 Index]