maser {maser} | R Documentation

## Create a maser object by importing rMATS splicing events.

### Description

Create a maser object by importing rMATS splicing events.

### Usage

    maser(path, cond_labels, ftype = c("ReadsOnTargetAndJunctionCounts",
      "JunctionCountOnly", "JCEC", "JC"))

### Arguments

`path` | a character specifiying the folder containing rMATS output files.
`cond_labels` | a character vector of length 2 describing labels for experimental conditions.
`ftype` | a character indicating the rMATS file type. Possible values are `c("ReadsOnTargetAndJunctionCounts", "JunctionCountOnly", "JCEC", "JC")`.

### Details

This function creates a maser object by importing rMATS output. `ftype` indicates which rMATS files to import. `ReadsOnTargetandJunction or JunctionCountOnly` are used in rMATS 3.2.5 or lower. Newer versions (>4.0.1) use `"JCEC" or "JC"` nomenclature.

### Value

A maser object.

### Examples

    path <- system.file("extdata", file.path("MATS_output"), package = "maser")
    hypoxia <- maser(path, c("Hypoxia 0h", "Hypoxia 24h"))

[Package maser version 1.12.1 Index]