meshSim {meshes} | R Documentation

## meshSim

### Description

semantic similarity between two MeSH term vectors

### Usage

    meshSim(meshID1, meshID2, measure = "Wang", semData)

### Arguments

`meshID1` | MeSH term vector
`meshID2` | MeSH term vector
`measure` | one of "Wang", "Resnik", "Rel", "Jiang" and "Lin"
`semData` | annotation data for semantic measurement, output by meshdata function

### Value

score matrix

### Author(s)

Guangchuang Yu https://guangchuangyu.github.io

### Examples

    ## library(meshes)
    ## library(AnnotationHub)
    ## ah <- AnnotationHub()
    ## qr_hsa <- query(ah, c("MeSHDb", "Homo sapiens"))
    ## filepath_hsa <- qr_hsa[[1]]
    ## db <- MeSHDbi::MeSHDb(filepath_hsa)
    ## hsamd <- meshdata(db, category='A', computeIC=T, database="gendoo")
    data(hsamd)
    meshSim("D000009", "D009130", semData=hsamd, measure="Resnik")

[Package meshes version 1.20.0 Index]