38fc510cb1741640d4347f7d9e2cf90b *CITATION
0b487147a14cfb2b3aa412288a90e3ef *DESCRIPTION
a1e7beb25c0babefe6c41d68751c528a *INDEX
f1364b88aba3b35eb9e6156e41369c93 *Meta/Rd.rds
cd110bd5e790838a4accb4fdc583d2d2 *Meta/data.rds
8503e676975364d771072956cdbca633 *Meta/features.rds
f1daee56ac5a2dc039168532f9047ba6 *Meta/hsearch.rds
0a57eb96cd77103583aec833b859ca97 *Meta/links.rds
fcb28ae6946b556334fe0e519df79d1a *Meta/nsInfo.rds
20b9be773b86b75cae52271d977d35b5 *Meta/package.rds
c538b34c84f0e8075e01d75c13cfdc95 *Meta/vignette.rds
1d7d5192a2b34e8c981a725f71404613 *NAMESPACE
4ef4d256bcb2997a89c9ef6160693eba *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/methylInheritance
216d987f835c0cd0c8beab0e4c0fc498 *R/methylInheritance.rdb
17495894e0acb5d3a442c107b183c196 *R/methylInheritance.rdx
cd5843b30414185bb53ad74fc604643d *data/demoForTransgenerationalAnalysis.RData
53e1e872ede5c844933a0c0e3078d293 *data/methylInheritanceResults.RData
a20ead6e2f4c57fd635836f5336788ea *data/samplesForTransgenerationalAnalysis.RData
471e579e0b7e0d54abc81be3fa491e41 *doc/index.html
bc3e1edc1f271a383bede9756424016e *doc/methylInheritance.R
80a5e6f4628d118d70057170e1be727c *doc/methylInheritance.Rmd
0cd8f85856569248abbdd87259c4dc7a *doc/methylInheritance.html
a799ea4668c80c7629cf524fe4c84646 *extdata/TEST/SITES/SITES_observed_results.RDS
07e8186a9c43af806cac6afb8891a643 *extdata/TEST/SITES/SITES_permutation_1.RDS
6f83cbf73ce711913f2e1623dddfd4f1 *extdata/TEST/SITES/SITES_permutation_2.RDS
4711161f733f2a125ae4a17326d54fd4 *extdata/TEST/SITES/SITES_permutation_3.RDS
e11d00ab0d73f22801545bcf505a94e5 *extdata/TEST/TILES/TILES_observed_results.RDS
d262377a2e40b2d8523b30b9c4c7cfad *extdata/TEST/TILES/TILES_permutation_1.RDS
b06a8b077211671725c0e409b9f0c445 *extdata/TEST/TILES/TILES_permutation_2.RDS
fdce6c20b8f9458db1f1799dd309aaf0 *extdata/TEST/TILES/TILES_permutation_3.RDS
73b99c36f8485e8e5af6332ba45104eb *extdata/TEST_01/observations/SITES/SITES_observed_results.RDS
4eda94e5f598ac6e63422327e2d16b1e *extdata/TEST_01/permutations/SITES/SITES_permutation_1.RDS
0b5ec80c650b3e561cb273d729ef6668 *extdata/TEST_01/permutations/SITES/SITES_permutation_10.RDS
18527f520d37d32dde7052d06c117778 *extdata/TEST_01/permutations/SITES/SITES_permutation_2.RDS
0a2e2913be856c216ecadd9a0086f403 *extdata/TEST_01/permutations/SITES/SITES_permutation_3.RDS
4100bec83ee09500f68af03937304a6e *extdata/TEST_01/permutations/SITES/SITES_permutation_4.RDS
904c1c2a1f3beaf8b09e6a666f2ef2aa *extdata/TEST_01/permutations/SITES/SITES_permutation_5.RDS
0cb11c2544dff83944a0ab75d6b6efda *extdata/TEST_01/permutations/SITES/SITES_permutation_6.RDS
920066bde7d4d16e25da2872e904553c *extdata/TEST_01/permutations/SITES/SITES_permutation_7.RDS
14606158b84a98ec75c010be56621d94 *extdata/TEST_01/permutations/SITES/SITES_permutation_8.RDS
78fc8acd75b789b927065a9d300ebecc *extdata/TEST_01/permutations/SITES/SITES_permutation_9.RDS
002023a36606afbd83788e33d88df685 *extdata/methylObj_001.RDS
9e911b79f5e9ab76935c30d67816267f *extdata/permutationResultsForSites.RDS
92eaa78ff715f7462687c3e8748a129f *extdata/resultsForTransgenerationalAnalysis.RDS
c32a1c275bb92a59f906220633e6f5ee *help/AnIndex
c13cab4d335844bc039b655c52e09481 *help/aliases.rds
1ad65e2c0c03d6cf58f12553cb2eb3ae *help/calculateSignificantLevel.html
9ab22942d9290f481b4593d52a426fa2 *help/createDataStructure.html
092ddc385f3097bed8adc5b4a95414f7 *help/createOutputDir.html
1efd281fc16b1bc49c59000ea1eea2c0 *help/demoForTransgenerationalAnalysis.html
b3ea05251549facd92db98b59f2af129 *help/extractInfo.html
b422bda2e95833b35b759db60a20d678 *help/formatInputMethylData.html
cc07e77eeb066beba9071898481999eb *help/getGRangesFromMethylDiff.html
54d3827f036744251195063b95bfc196 *help/interGeneration.html
0af0976e476b6f0fc16e190aaec95e9a *help/isInterGenerationResults.html
247bd00c53a48525c67794a2ed3c4f1c *help/loadAllRDSResults.html
7ab771e3dc8190c11e9de173dd7662dd *help/loadConvergenceData.html
132927e4ea6b02d04a26419a9df79fd4 *help/mergePermutationAndObservation.html
f03ee3aa03b85c2d517a4d0a68be20e3 *help/methylInheritance-package.html
f03ee3aa03b85c2d517a4d0a68be20e3 *help/methylInheritance.html
ef4ce017627dd3076f4628e1901e4346 *help/methylInheritance.rdb
204449ced636fdce76e72cf8a3fab4fb *help/methylInheritance.rdx
a0b97094e23e109f44294cd11217d83e *help/methylInheritanceAllResults.html
8a4c6987f8893b30316e8cc02e9d56c1 *help/methylInheritanceResults.html
8d60e8793a0fd9d0b2ea76ce3192d3ba *help/paths.rds
7c78722e1b22e26e1c95d14da5adf341 *help/plotConvergenceGraph.html
6e15a66022c8f5447d3984670fd469ba *help/plotGraph.html
a0b97094e23e109f44294cd11217d83e *help/print.methylInheritanceAllResults.html
6b187a62854df1988cebb83520f20fdb *help/readInterGenerationResults.html
4fcc880dc8dfe4467c9bd63042b0575a *help/runObservation.html
d2a230da56c37e873c7fbbee277c2b02 *help/runOnePermutationOnAllGenerations.html
882dd761a2196a7709b528b9557f312d *help/runPermutation.html
245b445e3221131c2080675179d5eec7 *help/samplesForTransgenerationalAnalysis.html
3f491526e3b5c0ff357330162e74945c *help/saveInterGenerationResults.html
47f67fd17b1db08f7b95fff53dd8a5e3 *help/validateExtractInfo.html
e87c6841994a143a0b7a97ea49bcd1ce *help/validateLoadConvergenceData.html
834e875eb6660e7d4b9cce9ff1eec528 *help/validateMergePermutationAndObservation.html
d54c341bc1325354bf7971402edc08f4 *help/validateRunObservation.html
932337660f361ee501a90403124d5979 *help/validateRunPermutation.html
b0050b0164c45d78da9d99b356d12c88 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
946b378135a7171bca9c08e355f5c3dc *html/calculateSignificantLevel.html
be37b39b90ecf0934e532dc7e97f22f3 *html/createDataStructure.html
11093ae0e92164ed361a367ad1ef5dca *html/createOutputDir.html
ee3d24c1f5a8f8b6fa0decd53b2519bc *html/demoForTransgenerationalAnalysis.html
521ac425eaf422960fcf23ce441c4d91 *html/extractInfo.html
13ac5fa97c578c48fa5f1191c5fa2963 *html/formatInputMethylData.html
c78ad13963c6f000f52282d9b8f9e3e8 *html/getGRangesFromMethylDiff.html
07e5d186e5c23a20d8248ed914f093d7 *html/interGeneration.html
e1e27cd55fe4e9773c2e1f82d7774a6a *html/isInterGenerationResults.html
7f7e0c0e126a5a34a6ebade1b718b434 *html/loadAllRDSResults.html
337967e9ac5a91227858110bf2e3d82a *html/loadConvergenceData.html
58d38c0520b22d0304214924de15f99d *html/mergePermutationAndObservation.html
d3b19e4fbe89082cd3ac27ffe4ef495b *html/methylInheritance-package.html
8a49824bb4f4297dbf1c0ebf1e578641 *html/methylInheritanceAllResults.html
3653535c38bc47adbb5b316d00c2cdff *html/methylInheritanceResults.html
adc015ae27e5d80b05ff749d19d74116 *html/plotConvergenceGraph.html
64e7693c34031c750147134af3983805 *html/plotGraph.html
bbb99960a64cc19a5a4b25b6bf6ab6a1 *html/readInterGenerationResults.html
fda25345513905c4533bb9ec9b454ff9 *html/runObservation.html
3c575ac444659ed40812a81ef2d3de9f *html/runOnePermutationOnAllGenerations.html
9bb5baa89c96566d4e56f83df72aa93f *html/runPermutation.html
a5f370df770d6bdb4294babb223bf987 *html/samplesForTransgenerationalAnalysis.html
d244ee4d4914a843a206b67f0bb8da4a *html/saveInterGenerationResults.html
7ae480d58e9fb91d2fa4ca6f61bb05d6 *html/validateExtractInfo.html
561edbfca4268ab1fab0e0e80cfd8875 *html/validateLoadConvergenceData.html
4bb55836127b50bb13a1867cff287f06 *html/validateMergePermutationAndObservation.html
cbd7fb9b4969e885881a6c4a1775ae47 *html/validateRunObservation.html
0540c7c0a215e3d674c6631c3055ddd8 *html/validateRunPermutation.html
63b6240800e15265ee60a06aae0e0644 *unitTests/test_methylInheritanceInternalMethods.R
786c82bb50beadd38e6d8ce07db35004 *unitTests/test_methylInheritanceMethods.R
d85e9da94a86e3a4484d9b3cfc74bef7 *unitTests/test_print_methylInheritanceAllResults.R
3286f875b871029aa3d8ab32e451902a *unitTests/test_validateRunPermutationUsingRDS.R
