getAssembly {methylKit} | R Documentation

## get assembly of the genome

### Description

The function returns the genome assembly stored in any of the `methylBase`,`methylBaseDB`,`methylRaw`, `methylRawDB`,`methylDiff` objects

### Usage

    getAssembly(x)

    ## S4 method for signature 'methylBase'
    getAssembly(x)

    ## S4 method for signature 'methylRaw'
    getAssembly(x)

    ## S4 method for signature 'methylDiff'
    getAssembly(x)

    ## S4 method for signature 'methylRawDB'
    getAssembly(x)

    ## S4 method for signature 'methylBaseDB'
    getAssembly(x)

    ## S4 method for signature 'methylDiffDB'
    getAssembly(x)

### Arguments

`x` | an `methylBase`,`methylBaseDB`, `methylRaw`,`methylRawDB` or `methylDiff` object

### Value

the assembly string for the object

### Examples

    data(methylKit)

    getAssembly(methylBase.obj)
    getAssembly(methylDiff.obj)
    getAssembly(methylRawList.obj[[1]])

[Package methylKit version 1.20.0 Index]