methylKit-defunct {methylKit} | R Documentation

## Deprecated/Defunct functions

### Description

These are deprecated or defunct functions. Most of them are replaced by genomation functions. See the vignette for examples on how to use genomation functions for annotation purposes.

### Usage

    annotate.WithFeature()

    annotate.WithFeature.Flank()

    annotate.WithGenicParts()

    read.bed()

    read.feature.flank()

    read.transcript.features()

    getFeatsWithTargetsStats()

    getFlanks()

    getMembers()

    getTargetAnnotationStats()

    plotTargetAnnotation()

    read()

    read.bismark()

    adjust.methylC()

    get.methylDiff()

[Package methylKit version 1.20.0 Index]