commonClockCpgs {methylclock} | R Documentation

## Get common CpGs

### Description

Show the required CpGs contained on input data for the implemented clocks

### Usage

    commonClockCpgs(object, clock)

### Arguments

`object` | resulting object from checkClocks functions
`clock` | string with the implemented clock, possible values are : "Knight", "Bohlin", "Mayne" and "Lee", "Horvath", "Hannum", "Levine", "skinHorvath", "PedBE", "Wu" and "TL"

### Value

The common CpGs between input data and defined GA clock

### Examples

    TestDataset <- get_TestDataset()
    cpgs.missing.GA <- checkClocksGA(TestDataset)
    cpgs.missing <- checkClocks(TestDataset)
    commonClockCpgs(cpgs.missing.GA, "Bohlin")
    commonClockCpgs(cpgs.missing, "Hannum")

[Package methylclock version 1.0.1 Index]