summary.mfa {mfa} | R Documentation

## Summarise an mfa fit

### Description

Returns summary statistics of an mfa fit, including MAP pseudotime and branch allocations along with uncertainties.

### Usage

    ## S3 method for class 'mfa'
    summary(object, ...)

### Arguments

`object` | An MFA fit returned by a call to `mfa`
`...` | Additional arguments

### Value

A `data_frame` with the following columns:

- `pseudotime` The MAP pseudotime estimate

- `branch` The MAP branch estimate

- `branch_certainty` The proportion of traces for which the cell is assigned to its MAP branch

- `pseudotime_lower` The lower bound on the 95 (HPD) credible interval

- `pseudotime_upper` The upper bound on the 95

### Examples

    synth <- create_synthetic(C = 20, G = 5)
    m <- mfa(synth$X)
    ms <- summary(m)

[Package mfa version 1.16.3 Index]