mia-datasets {mia} | R Documentation

## mia datasets

### Description

These datasets are conversions of the phyloseq datasets `GlobalPatterns` `enterotype`, `esophagus` and `soilrep`.

`dmn_se` contains an example `SummarizedExperiment` derived from data in the `DirichletMultinomal` package. See `?calculateDMN` for more details.

### Usage

    data(GlobalPatterns)

    data(enterotype)

    data(esophagus)

    data(soilrep)

    data(dmn_se)

### Format

An object of class `TreeSummarizedExperiment` with 19216 rows and 26 columns.

An object of class `TreeSummarizedExperiment` with 553 rows and 280 columns.

An object of class `TreeSummarizedExperiment` with 58 rows and 3 columns.

An object of class `TreeSummarizedExperiment` with 16825 rows and 56 columns.

An object of class `SummarizedExperiment` with 130 rows and 278 columns.

[Package mia version 1.2.7 Index]