simulate2MRexperiment {microbiomeDASim} | R Documentation

## Convert simulated output to MRexperiment object

### Description

In order to allow investigators to more easily incorporate simulated data, this package converts the raw output into an MRexperiment object used in the `metagenomeSeq` package.

### Usage

    simulate2MRexperiment(obj, missing = FALSE)

### Arguments

`obj` | output from either `gen_norm_microbiome` or `mvrnorm_sim`
`missing` | logical indicator for objects from `mvrnorm_sim`. If missing = TRUE then create MRexperiment object with `Y_obs` else use `Y`.

### Value

An MRexperiment object

### Examples

    bug_gen <- gen_norm_microbiome(features=6, diff_abun_features=3,
                                   n_control=30, n_treat=20, control_mean=2,
                                   sigma=2, num_timepoints=4, t_interval=c(0, 3),
                                   rho=0.9, corr_str="compound", func_form="M",
                                   beta=c(4, 3), IP=c(2, 3.3, 6),
                                   missing_pct=0.2, missing_per_subject=2,
                                   miss_val=0, asynch_time=TRUE)
    bug_gen_MR <- simulate2MRexperiment(bug_gen)
    class(bug_gen_MR)

[Package microbiomeDASim version 1.8.0 Index]