normalizeData {microbiomeExplorer} | R Documentation

## Calls appropriate normalization functions depending on input parameter The two available methods included in the package are based on either calculating proportions or by using cumulative sum scaling (CSS), Paulson, et al. Nat Meth 2013.

### Description

Calls appropriate normalization functions depending on input parameter The two available methods included in the package are based on either calculating proportions or by using cumulative sum scaling (CSS), Paulson, et al. Nat Meth 2013.

### Usage

    normalizeData(MRobj, norm_method)

### Arguments

`MRobj` | the MRexperiment
`norm_method` | method to use for normalization; CSS or Proportional

### Value

the normalized MRobj

### Examples

    data("mouseData", package = "metagenomeSeq")
    normalizeData(mouseData, norm_method = "CSS")

[Package microbiomeExplorer version 1.4.0 Index]