plotLongFeature {microbiomeExplorer} | R Documentation

## Plot longitudinal features

### Description

This function plots the reads of a particular feature over different time points.

### Usage

    plotLongFeature(
      aggdat,
      feature,
      x_var,
      id_var = "SAMPLE_ID",
      plotTitle = NULL,
      ylab = "Reads",
      log = FALSE,
      showLines = TRUE,
      fixedHeight = NULL,
      x_levels = NULL,
      pwidth = 650
    )

### Arguments

`aggdat` | aggregated MRExperiment
`feature` | Feature to plot.
`x_var` | Phenotype to show along on X-axis.
`id_var` | phenotype used to connect data points. Default is "SAMPLE_ID"
`plotTitle` | Plot title. Default shows no title.
`ylab` | Y-axis label. Default is "Reads"
`log` | Log2 transform data. Default is FALSE.
`showLines` | add lines between the points
`fixedHeight` | sets a specific plot height (differential analysis)
`x_levels` | restrict to specific levels of x_var (differential analysis)
`pwidth` | overall plot width; default is 650

### Value

plotly object holding long feature plot

### Author(s)

Janina Reeder, Mo Huang

### Examples

    data("mouseData", package = "metagenomeSeq")
    aggdat <- aggFeatures(mouseData, level = "genus")
    plotLongFeature(aggdat, feature = "Prevotella", x_var = "diet",
                    id_var = "mouseID")

[Package microbiomeExplorer version 1.4.0 Index]